hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14441609/chunk_1/iprscan-20080501-14441609.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1007 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04054.5.ls CCR4-Not complex component, Not1 988.8 1.8e-294 1 PF04054.5.fs CCR4-Not complex component, Not1 986.9 7e-294 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04054.5.fs 1/1 1455 1835 .] 1 415 [] 986.9 7e-294 PF04054.5.ls 1/1 1455 1835 .] 1 415 [] 988.8 1.8e-294 Alignments of top-scoring domains: PF04054.5.fs: domain 1 of 1, from 1455 to 1835: score 986.9, E = 7e-294 *->sllsELatirthdaedilesitrqelvsilsaFlntFsgylhaLqPr +ll+EL+ ++e++le+i ++++l+aF+ntF h+L+P+ KIAA1007 1455 MLLLELN-----APEHVLETI----NFQTLTAFCNTF----HILRPT 1488 afCPgFsFAWleLiSHRmlLprlLantGiaetvpnqKgwplyaqLLiDLl ++ PgF++AWleLiSHR++++r+La+ +p+qKgwp+yaqLLiDL+ KIAA1007 1489 KA-PGFVYAWLELISHRIFIARMLAH------TPQQKGWPMYAQLLIDLF 1531 KFLdPFLrnaelgkpvqlLYKGTLRVLLVLLHDFPeFLcdyHYelcdvIP K+L+PFLrn+el+kp+q+LYKGTLRVLLVLLHDFPeFLcdyHY++cdvIP KIAA1007 1532 KYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP 1581 pnCvQLRNlILSAFPrnMrLPDPFtpnLKqVdmLPEikeaPkilssvvas pnC+QLRNlILSAFPrnMrLPDPFtpnLK VdmL+Ei++aP+il+++ ++ KIAA1007 1582 PNCIQLRNLILSAFPRNMRLPDPFTPNLK-VDMLSEINIAPRILTNF-TG 1629 lepkqlkkDLDeYLksRkpNvtFlseLrtelqvssdiKkGvgydgtryns ++p+q+kkDLD+YLk+R+p vtFls+Lr++lqvs++ + g+ryn+ KIAA1007 1630 VMPPQFKKDLDSYLKTRSP-VTFLSDLRSNLQVSNE--P-----GNRYNL 1671 kLiNaLVLyvGiqAIahieaKrassntvnitkSsymdifqnLavdlDtEg +LiNaLVLyvG+qAIahi++K++++++++it+S++mdifqnLavdlDtEg KIAA1007 1672 QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 1721 RYllLnAIANQLRYPNsHThYFSCvlLYLFkesenedQkLaIQEQITRVL RYl+LnAIANQLRYPNsHThYFSC++LYLF+e+++e aIQEQITRVL KIAA1007 1722 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTE----AIQEQITRVL 1767 LERLIVNRPHPWGLLITFiELIKNpdYnFWkhpFvkcaPEIekLFqsvar LERLIVNRPHPWGLLITFiELIKNp+++FW+h+Fv+caPEIekLFqsva+ KIAA1007 1768 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQ 1817 scmaasssqqvmqsegae<-* +cm+++++qqvm+++ga+ KIAA1007 1818 CCMGQKQAQQVMEGTGAS 1835 PF04054.5.ls: domain 1 of 1, from 1455 to 1835: score 988.8, E = 1.8e-294 *->sllsELatirthdaedilesitrqelvsilsaFlntFsgylhaLqPr +ll+EL+ ++e++le+i ++++l+aF+ntF h+L+P+ KIAA1007 1455 MLLLELN-----APEHVLETI----NFQTLTAFCNTF----HILRPT 1488 afCPgFsFAWleLiSHRmlLprlLantGiaetvpnqKgwplyaqLLiDLl ++ PgF++AWleLiSHR++++r+La+ +p+qKgwp+yaqLLiDL+ KIAA1007 1489 KA-PGFVYAWLELISHRIFIARMLAH------TPQQKGWPMYAQLLIDLF 1531 KFLdPFLrnaelgkpvqlLYKGTLRVLLVLLHDFPeFLcdyHYelcdvIP K+L+PFLrn+el+kp+q+LYKGTLRVLLVLLHDFPeFLcdyHY++cdvIP KIAA1007 1532 KYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIP 1581 pnCvQLRNlILSAFPrnMrLPDPFtpnLKqVdmLPEikeaPkilssvvas pnC+QLRNlILSAFPrnMrLPDPFtpnLK VdmL+Ei++aP+il+++ ++ KIAA1007 1582 PNCIQLRNLILSAFPRNMRLPDPFTPNLK-VDMLSEINIAPRILTNF-TG 1629 lepkqlkkDLDeYLksRkpNvtFlseLrtelqvssdiKkGvgydgtryns ++p+q+kkDLD+YLk+R+p vtFls+Lr++lqvs++ + g+ryn+ KIAA1007 1630 VMPPQFKKDLDSYLKTRSP-VTFLSDLRSNLQVSNE--P-----GNRYNL 1671 kLiNaLVLyvGiqAIahieaKrassntvnitkSsymdifqnLavdlDtEg +LiNaLVLyvG+qAIahi++K++++++++it+S++mdifqnLavdlDtEg KIAA1007 1672 QLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 1721 RYllLnAIANQLRYPNsHThYFSCvlLYLFkesenedQkLaIQEQITRVL RYl+LnAIANQLRYPNsHThYFSC++LYLF+e+++e aIQEQITRVL KIAA1007 1722 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTE----AIQEQITRVL 1767 LERLIVNRPHPWGLLITFiELIKNpdYnFWkhpFvkcaPEIekLFqsvar LERLIVNRPHPWGLLITFiELIKNp+++FW+h+Fv+caPEIekLFqsva+ KIAA1007 1768 LERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPEIEKLFQSVAQ 1817 scmaasssqqvmqsegae<-* +cm+++++qqvm+++ga+ KIAA1007 1818 CCMGQKQAQQVMEGTGAS 1835 //