hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14455809/chunk_1/iprscan-20080501-14455809.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1008 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00773.9.ls RNB domain 442.6 4.7e-130 1 PF00773.9.fs RNB domain 440.7 1.8e-129 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00773.9.fs 1/1 444 774 .. 1 350 [] 440.7 1.8e-129 PF00773.9.ls 1/1 444 774 .. 1 350 [] 442.6 4.7e-130 Alignments of top-scoring domains: PF00773.9.fs: domain 1 of 1, from 444 to 774: score 440.7, E = 1.8e-129 *->RrDLprdlpffTIDpedakDiDDAlsierlddGgyrLgVHIADVshy R+DL r+l+++++Dp+++ DiDDAl+++ l++G+ ++gVHIADVsh+ KIAA1008 444 REDL-RHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHF 489 VkpgSpLDreArkRgtSvYLPerviPMLPeeLsndlCSLnpgedRlAlSv ++pg +LD+e ++Rgt+vYL e++i+M Pe Ls++lCSL+ ++dRlA+S+ KIAA1008 490 IRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSC 539 eitidkdGevldyeiypsvIrskarLtYeevqelle........adsLrl +++++ + e+l++++++svI+ska LtY e+q +++ + +++ ++sLr KIAA1008 540 IWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDsanmnddiTTSLRG 589 LllmelakaLrkkRlkrGaleledplppnlevkfilde.egepvdivree L+ +lak+L+k+R+++Gal l +p ev+f +d + +p+d +e KIAA1008 590 LN--KLAKILKKRRIEKGALTL-S-SP---EVRFHMDSeTHDPIDLQTKE 632 sekrtpahsLiEEfMllANeavArfls.engipgiyRvhpePdeevaknk +++s++EEfMllAN++vA+++++e+ +++++R hp+P + + KIAA1008 633 ---LRETNSMVEEFMLLANISVAKKIHeEFSEHALLRKHPAPPPS----N 675 lqdllkllamsaalGleldldseg.leldiktlkslqklleelkksdegs + l k + + +le + t+ksl + l+++ + + KIAA1008 676 YEILVKAA-------------RSRnLEIKTDTAKSLAESLDQAESP-TFP 711 peelllnylllrsmkrAeYfvs.es.stepagHfGLglehYtHFTSPIRR ++ ll++l +r+m++A+Yf+s+++++ + H+GL+ ++YtHFTSPIRR KIAA1008 712 YLNTLLRILATRCMMQAVYFCSgMDnDFH---HYGLASPIYTHFTSPIRR 758 YpDLivHRqLkaaLag<-* Y+D+ivHR+L a+ KIAA1008 759 YADVIVHRLLAVAIGA 774 PF00773.9.ls: domain 1 of 1, from 444 to 774: score 442.6, E = 4.7e-130 *->RrDLprdlpffTIDpedakDiDDAlsierlddGgyrLgVHIADVshy R+DL r+l+++++Dp+++ DiDDAl+++ l++G+ ++gVHIADVsh+ KIAA1008 444 REDL-RHLCICSVDPPGCTDIDDALHCRELENGNLEVGVHIADVSHF 489 VkpgSpLDreArkRgtSvYLPerviPMLPeeLsndlCSLnpgedRlAlSv ++pg +LD+e ++Rgt+vYL e++i+M Pe Ls++lCSL+ ++dRlA+S+ KIAA1008 490 IRPGNALDQESARRGTTVYLCEKRIDMVPELLSSNLCSLKCDVDRLAFSC 539 eitidkdGevldyeiypsvIrskarLtYeevqelle........adsLrl +++++ + e+l++++++svI+ska LtY e+q +++ + +++ ++sLr KIAA1008 540 IWEMNHNAEILKTKFTKSVINSKASLTYAEAQLRIDsanmnddiTTSLRG 589 LllmelakaLrkkRlkrGaleledplppnlevkfilde.egepvdivree L+ +lak+L+k+R+++Gal l +p ev+f +d + +p+d +e KIAA1008 590 LN--KLAKILKKRRIEKGALTL-S-SP---EVRFHMDSeTHDPIDLQTKE 632 sekrtpahsLiEEfMllANeavArfls.engipgiyRvhpePdeevaknk +++s++EEfMllAN++vA+++++e+ +++++R hp+P + + KIAA1008 633 ---LRETNSMVEEFMLLANISVAKKIHeEFSEHALLRKHPAPPPS----N 675 lqdllkllamsaalGleldldseg.leldiktlkslqklleelkksdegs + l k + + +le + t+ksl + l+++ + + KIAA1008 676 YEILVKAA-------------RSRnLEIKTDTAKSLAESLDQAESP-TFP 711 peelllnylllrsmkrAeYfvs.es.stepagHfGLglehYtHFTSPIRR ++ ll++l +r+m++A+Yf+s+++++ + H+GL+ ++YtHFTSPIRR KIAA1008 712 YLNTLLRILATRCMMQAVYFCSgMDnDFH---HYGLASPIYTHFTSPIRR 758 YpDLivHRqLkaaLag<-* Y+D+ivHR+L a+ KIAA1008 759 YADVIVHRLLAVAIGA 774 //