hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14491847/chunk_1/iprscan-20080501-14491847.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1010 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03114.8.ls BAR domain 257.4 2.8e-74 1 PF03114.8.fs BAR domain 255.5 1e-73 1 PF00621.11.fs RhoGEF domain 94.8 8e-28 1 PF00621.11.ls RhoGEF domain 96.6 7e-26 1 PF07653.7.fs Variant SH3 domain 85.1 7.2e-24 3 PF00018.18.fs SH3 domain 79.5 5.5e-21 3 PF07653.7.ls Variant SH3 domain 69.6 9.6e-18 2 PF00018.18.ls SH3 domain 61.0 3.7e-15 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00018.18.ls 1/3 1 38 [. 1 59 [] 7.9 0.0028 PF00018.18.fs 1/3 2 38 .. 19 59 .] 29.0 3.8e-07 PF00621.11.ls 1/1 526 704 .. 1 207 [] 96.6 7e-26 PF00621.11.fs 1/1 526 704 .. 1 207 [] 94.8 8e-28 PF03114.8.fs 1/1 735 945 .. 1 264 [] 255.5 1e-73 PF03114.8.ls 1/1 735 945 .. 1 264 [] 257.4 2.8e-74 PF00018.18.ls 2/3 1026 1084 .. 1 59 [] 4.3 0.0067 PF07653.7.ls 1/2 1027 1084 .. 1 69 [] 31.5 2.7e-06 PF07653.7.fs 2/3 1027 1084 .. 1 69 [] 29.7 6.4e-08 PF00018.18.fs 3/3 1254 1312 .. 1 59 [] 46.8 5e-12 PF00018.18.ls 3/3 1254 1312 .. 1 59 [] 48.8 1.7e-11 PF07653.7.fs 3/3 1255 1312 .. 1 69 [] 36.2 8.6e-10 PF07653.7.ls 2/2 1255 1312 .. 1 69 [] 38.0 2.9e-08 Alignments of top-scoring domains: PF00018.18.ls: domain 1 of 3, from 1 to 38: score 7.9, E = 0.0028 *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk F+ GD+i +l+ +d gW++g lk G+ KIAA1010 1 -----------------DFEVGDKIRILATLED-GWLEGSLK---GR 26 eGliPsNYVepv<-* +G++P +V + KIAA1010 27 TGIFPYRFVKLC 38 PF00018.18.fs: domain 1 of 3, from 2 to 38: score 29.0, E = 3.8e-07 *->FkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNYVepv<-* F+ GD+i +l+ +d gW++g lk G++G++P +V + KIAA1010 2 FEVGDKIRILATLED-GWLEGSLK---GRTGIFPYRFVKLC 38 PF00621.11.ls: domain 1 of 1, from 526 to 704: score 96.6, E = 7e-26 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ Ell+TE+ Y+rdLe+ + m p+++a+ ++ d e +F KIAA1010 526 VIEELLQTERDYIRDLEMCIERIMVPMQQAQ------VPNIDFEGLF 566 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+ +++ +++L +Le+ + G++Fl + KIAA1010 567 GNMQMVIKVSKQLLA-ALEISDAV------------------GPVFLGHR 597 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldevea..ssntgA +e + Y Yc+n++ A+ lle ++ ++ ++ l++ a+ +s+ + KIAA1010 598 DELEGTYKIYCQNHDEAIALLEI---YEKDEKIQKHLQDSLAdlKSLYN- 643 kddavklt......LqsLLlkPvqRilrYpLLLkeLLkhtpegedssese +++ ++ +L s+L+kPvqR+ rYpLLL eLL tpe ++++++ KIAA1010 644 -----EWGctnyinLGSFLIKPVQRVMRYPLLLMELLNSTPE--SHPDKV 686 dLkkaldalqdlaksiNe<-* L a a++++ iNe KIAA1010 687 PLTNAVLAVKEINVNINE 704 PF00621.11.fs: domain 1 of 1, from 526 to 704: score 94.8, E = 8e-28 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ Ell+TE+ Y+rdLe+ + m p+++a+ ++ d e +F KIAA1010 526 VIEELLQTERDYIRDLEMCIERIMVPMQQAQ------VPNIDFEGLF 566 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+ +++ +++L +Le+ + G++Fl + KIAA1010 567 GNMQMVIKVSKQLLA-ALEISDAV------------------GPVFLGHR 597 aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldevea..ssntgA +e + Y Yc+n++ A+ lle ++ ++ ++ l++ a+ +s+ + KIAA1010 598 DELEGTYKIYCQNHDEAIALLEI---YEKDEKIQKHLQDSLAdlKSLYN- 643 kddavklt......LqsLLlkPvqRilrYpLLLkeLLkhtpegedssese +++ ++ +L s+L+kPvqR+ rYpLLL eLL tpe ++++++ KIAA1010 644 -----EWGctnyinLGSFLIKPVQRVMRYPLLLMELLNSTPE--SHPDKV 686 dLkkaldalqdlaksiNe<-* L a a++++ iNe KIAA1010 687 PLTNAVLAVKEINVNINE 704 PF03114.8.fs: domain 1 of 1, from 735 to 945: score 255.5, E = 1e-73 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv + K+ +nR+s +lk+ +G+a ++k De+Fee e++f+++e+l+ KIAA1010 735 IIKK----SNRVSSHLKHLTGFAPQIK--DEVFEETEKNFRMQERLI 775 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm k+++++++lYlq+++++ + ++ + a +m KIAA1010 776 KSFIRDLSLYLQHIRESACVKV----------------------VAAVSM 803 qeigeelgddsedPfGkaLekygeamkql.aqlleqldervkqnfldPlt +++++e g++++ e+++++++++++ql+ +++er++++++ Pl+ KIAA1010 804 WDVCMERGHRDL-------EQFERVHRYIsDQLFTNFKERTERLVISPLN 846 nllekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklak +ll ++f++++k+++K+ +K+LD++++ +r +k+k+kk+ KIAA1010 847 QLL-SMFTGPHKLVQKRFDKLLDFYNCTERAEKLKDKKT----------- 884 AdqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqld eEl+ A++++E+ln++L++eLp++++++++ ++n++++++ea++d KIAA1010 885 ----LEELQSARNNYEALNAQLLDELPKFHQYAQGLFTNCVHGYAEAHCD 930 fhrqsaqlleqlqqqLdk<-* f +q+ leql++ L++ KIAA1010 931 FVHQA---LEQLKPLLSL 945 PF03114.8.ls: domain 1 of 1, from 735 to 945: score 257.4, E = 2.8e-74 *->lkKqAGgffnRasqllkeKvGkaekTkvLDedFeelerrfdtteklv + K+ +nR+s +lk+ +G+a ++k De+Fee e++f+++e+l+ KIAA1010 735 IIKK----SNRVSSHLKHLTGFAPQIK--DEVFEETEKNFRMQERLI 775 kklvketklYlqpnpaarakqkvleklskrrgqvkrkgypqPetlLaetm k+++++++lYlq+++++ + ++ + a +m KIAA1010 776 KSFIRDLSLYLQHIRESACVKV----------------------VAAVSM 803 qeigeelgddsedPfGkaLekygeamkql.aqlleqldervkqnfldPlt +++++e g++++ e+++++++++++ql+ +++er++++++ Pl+ KIAA1010 804 WDVCMERGHRDL-------EQFERVHRYIsDQLFTNFKERTERLVISPLN 846 nllekefkeiqkhikKlerKrLDyDakrtrlkkaktkkskkakDekklak +ll ++f++++k+++K+ +K+LD++++ +r +k+k+kk+ KIAA1010 847 QLL-SMFTGPHKLVQKRFDKLLDFYNCTERAEKLKDKKT----------- 884 AdqleeElrqAqqkfEelneeLkeeLpnlleleveflvnqlqafveaqld eEl+ A++++E+ln++L++eLp++++++++ ++n++++++ea++d KIAA1010 885 ----LEELQSARNNYEALNAQLLDELPKFHQYAQGLFTNCVHGYAEAHCD 930 fhrqsaqlleqlqqqLdk<-* f +q+ leql++ L++ KIAA1010 931 FVHQA---LEQLKPLLSL 945 PF00018.18.ls: domain 2 of 3, from 1026 to 1084: score 4.3, E = 0.0067 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt k ++A ++a ++ ++s+ +GD + v++k+d ++++ W + KIAA1010 1026 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPmgsQNRWLIDNGV- 1071 gGkeGliPsNYVepv<-* +G++ s+++ p+ KIAA1010 1072 --TKGFVYSSFLKPY 1084 PF07653.7.ls: domain 1 of 2, from 1027 to 1084: score 31.5, E = 2.7e-06 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a ++++a + + sl +Gd+v Vi +k+d+ +++ KIAA1010 1027 LFQAERNFNA-AQDLD------VSLLEGDLVGVI----KKKDPmgsq 1062 gwwegeslggGrrrRGlvPssaveel<-* + w+ ++ g + G+v+ss+++++ KIAA1010 1063 NRWLIDN--GVTK--GFVYSSFLKPY 1084 PF07653.7.fs: domain 2 of 3, from 1027 to 1084: score 29.7, E = 6.4e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.... +++a ++++a + + sl +Gd+v Vi +k+d+ +++ KIAA1010 1027 LFQAERNFNA-AQDLD------VSLLEGDLVGVI----KKKDPmgsq 1062 gwwegeslggGrrrRGlvPssaveel<-* + w+ ++ g + G+v+ss+++++ KIAA1010 1063 NRWLIDN--GVTK--GFVYSSFLKPY 1084 PF00018.18.fs: domain 3 of 3, from 1254 to 1312: score 46.8, E = 5e-12 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt +++ A Y ++ar+++ELs + ++++le +d +++ +WW ++++ KIAA1010 1254 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVtgnTEWWLAEVN-- 1298 gGkeGliPsNYVepv<-* Gk+G++PsNY+++ KIAA1010 1299 -GKKGYVPSNYIRKT 1312 PF00018.18.ls: domain 3 of 3, from 1254 to 1312: score 48.8, E = 1.7e-11 *->kkvvALYDYearesdELsFkkGDvitvleksdd...pgWWkgrlkgt +++ A Y ++ar+++ELs + ++++le +d +++ +WW ++++ KIAA1010 1254 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVtgnTEWWLAEVN-- 1298 gGkeGliPsNYVepv<-* Gk+G++PsNY+++ KIAA1010 1299 -GKKGYVPSNYIRKT 1312 PF07653.7.fs: domain 3 of 3, from 1255 to 1312: score 36.2, E = 8.6e-10 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ a+ ++a +++ne Ls+ +++++k++ ++++ +++ww KIAA1010 1255 VYFAVYTFKA-RNPNE------LSVSANQKLKIL-EFKDVTGNtEWW 1293 egeslggGrrrRGlvPssaveel<-* ++e+ +G++ G+vPs+++++ KIAA1010 1294 LAEV--NGKK--GYVPSNYIRKT 1312 PF07653.7.ls: domain 2 of 2, from 1255 to 1312: score 38.0, E = 2.9e-08 *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskddd.gww ++ a+ ++a +++ne Ls+ +++++k++ ++++ +++ww KIAA1010 1255 VYFAVYTFKA-RNPNE------LSVSANQKLKIL-EFKDVTGNtEWW 1293 egeslggGrrrRGlvPssaveel<-* ++e+ +G++ G+vPs+++++ KIAA1010 1294 LAEV--NGKK--GYVPSNYIRKT 1312 //