hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14585943/chunk_1/iprscan-20080501-14585943.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1015 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 369.0 7e-108 13 PF00096.16.fs Zinc finger, C2H2 type 350.6 2.5e-102 13 PF02023.7.ls SCAN domain 207.9 2.1e-59 1 PF02023.7.fs SCAN domain 206.0 8.2e-59 1 PF01352.17.fs KRAB box 50.7 1.1e-13 1 PF01352.17.ls KRAB box 50.1 7.1e-12 1 PF01286.9.fs XPA protein N-terminal 35.9 1.9e-09 11 PF01096.9.fs Transcription factor S-II (TFIIS) 25.6 3.2e-07 10 PF07754.2.fs Domain of unknown function (DUF1610) 25.0 1.1e-05 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.fs 1/1 46 141 .. 1 96 [] 206.0 8.2e-59 PF02023.7.ls 1/1 46 141 .. 1 96 [] 207.9 2.1e-59 PF01352.17.ls 1/1 223 260 .. 1 41 [] 50.1 7.1e-12 PF01352.17.fs 1/1 224 260 .. 5 41 .] 50.7 1.1e-13 PF00096.16.ls 1/13 348 370 .. 1 24 [] 28.3 2.5e-05 PF00096.16.fs 1/13 348 370 .. 1 24 [] 26.3 2.6e-05 PF00096.16.fs 2/13 376 398 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 2/13 376 398 .. 1 24 [] 33.6 6.5e-07 PF00096.16.fs 3/13 404 426 .. 1 24 [] 28.7 6.6e-06 PF00096.16.ls 3/13 404 426 .. 1 24 [] 30.7 4.8e-06 PF00096.16.ls 4/13 432 454 .. 1 24 [] 28.8 1.8e-05 PF00096.16.fs 4/13 432 454 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 5/13 551 573 .. 1 24 [] 33.8 5.5e-07 PF00096.16.fs 5/13 551 573 .. 1 24 [] 31.9 1.1e-06 PF00096.16.fs 6/13 579 601 .. 1 24 [] 32.4 8e-07 PF00096.16.ls 6/13 579 601 .. 1 24 [] 34.4 3.7e-07 PF00096.16.ls 7/13 607 629 .. 1 24 [] 34.0 4.8e-07 PF00096.16.fs 7/13 607 629 .. 1 24 [] 32.0 9.8e-07 PF00096.16.ls 8/13 635 657 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 8/13 635 657 .. 1 24 [] 30.1 2.9e-06 PF00096.16.ls 9/13 663 685 .. 1 24 [] 19.3 0.013 PF00096.16.ls 10/13 719 741 .. 1 24 [] 34.7 3e-07 PF00096.16.fs 10/13 719 741 .. 1 24 [] 32.7 6.6e-07 PF00096.16.fs 12/13 775 797 .. 1 24 [] 28.3 8.4e-06 PF00096.16.ls 12/13 775 797 .. 1 24 [] 30.3 6.4e-06 PF00096.16.ls 13/13 803 825 .. 1 24 [] 27.0 6.1e-05 PF00096.16.fs 13/13 803 825 .. 1 24 [] 25.0 5.4e-05 Alignments of top-scoring domains: PF02023.7.fs: domain 1 of 1, from 46 to 141: score 206.0, E = 8.2e-59 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p E+f qrFR f Y+e+sGPrEALs+LR LC++WLrPE+hTKEQIL KIAA1015 46 PTFETFYQRFRHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQIL 92 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+E Q wV+ehhPeSgEEaV+++E ++rel+e +qq+ KIAA1015 93 ELLVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQI 141 -* KIAA1015 - - PF02023.7.ls: domain 1 of 1, from 46 to 141: score 207.9, E = 2.1e-59 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL p E+f qrFR f Y+e+sGPrEALs+LR LC++WLrPE+hTKEQIL KIAA1015 46 PTFETFYQRFRHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQIL 92 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlEdLerelDepgqqV< ELLVLEQFLtILP+E Q wV+ehhPeSgEEaV+++E ++rel+e +qq+ KIAA1015 93 ELLVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQI 141 -* KIAA1015 - - PF01352.17.ls: domain 1 of 1, from 223 to 260: score 50.1, E = 7.1e-12 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* DVaV F EEW++Ld +Q++LYrd ENy+ ++S+g KIAA1015 223 ---ADVAVSFILEEWGHLDQSQKSLYRDDRKENYGSITSMG 260 PF01352.17.fs: domain 1 of 1, from 224 to 260: score 50.7, E = 1.1e-13 *->DVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* DVaV F EEW++Ld +Q++LYrd ENy+ ++S+g KIAA1015 224 DVAVSFILEEWGHLDQSQKSLYRDDRKENYGSITSMG 260 PF00096.16.ls: domain 1 of 13, from 348 to 370: score 28.3, E = 2.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk F + sn+ +H+r+H KIAA1015 348 HRCS-DCGKFFLQASNFIQHRRIH 370 PF00096.16.fs: domain 1 of 13, from 348 to 370: score 26.3, E = 2.6e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCgk F + sn+ +H+r+H KIAA1015 348 HRCS-DCGKFFLQASNFIQHRRIH 370 PF00096.16.fs: domain 2 of 13, from 376 to 398: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgks++++ +L++H+r+H KIAA1015 376 FKCG-ECGKSYNQRVHLTQHQRVH 398 PF00096.16.ls: domain 2 of 13, from 376 to 398: score 33.6, E = 6.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC +Cgks++++ +L++H+r+H KIAA1015 376 FKCG-ECGKSYNQRVHLTQHQRVH 398 PF00096.16.fs: domain 3 of 13, from 404 to 426: score 28.7, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L +H +H KIAA1015 404 YKCQ-VCGKAFRVSSHLVQHHSVH 426 PF00096.16.ls: domain 3 of 13, from 404 to 426: score 30.7, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F+ +s+L +H +H KIAA1015 404 YKCQ-VCGKAFRVSSHLVQHHSVH 426 PF00096.16.ls: domain 4 of 13, from 432 to 454: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F r+s+L Hl++H KIAA1015 432 YGCN-ECGKNFGRHSHLIEHLKRH 454 PF00096.16.fs: domain 4 of 13, from 432 to 454: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F r+s+L Hl++H KIAA1015 432 YGCN-ECGKNFGRHSHLIEHLKRH 454 PF00096.16.ls: domain 5 of 13, from 551 to 573: score 33.8, E = 5.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF ++++L +H+r+H KIAA1015 551 HKCN-ECGKSFIQSAHLIQHQRIH 573 PF00096.16.fs: domain 5 of 13, from 551 to 573: score 31.9, E = 1.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +CgksF ++++L +H+r+H KIAA1015 551 HKCN-ECGKSFIQSAHLIQHQRIH 573 PF00096.16.fs: domain 6 of 13, from 579 to 601: score 32.4, E = 8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgks++++ +L++H+r+H KIAA1015 579 FRCE-ECGKSYNQRVHLTQHQRVH 601 PF00096.16.ls: domain 6 of 13, from 579 to 601: score 34.4, E = 3.7e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgks++++ +L++H+r+H KIAA1015 579 FRCE-ECGKSYNQRVHLTQHQRVH 601 PF00096.16.ls: domain 7 of 13, from 607 to 629: score 34.0, E = 4.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cgk+F+ +s+L +H+ +H KIAA1015 607 YTCP-LCGKAFRVRSHLVQHQSVH 629 PF00096.16.fs: domain 7 of 13, from 607 to 629: score 32.0, E = 9.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp Cgk+F+ +s+L +H+ +H KIAA1015 607 YTCP-LCGKAFRVRSHLVQHQSVH 629 PF00096.16.ls: domain 8 of 13, from 635 to 657: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F r+s+L Hlr H KIAA1015 635 FKCN-ECGKGFGRRSHLAGHLRLH 657 PF00096.16.fs: domain 8 of 13, from 635 to 657: score 30.1, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk F r+s+L Hlr H KIAA1015 635 FKCN-ECGKGFGRRSHLAGHLRLH 657 PF00096.16.ls: domain 9 of 13, from 663 to 685: score 19.3, E = 0.013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+ F + +L H+ H KIAA1015 663 HQCR-ECGEIFFQYVSLIEHQVLH 685 PF00096.16.ls: domain 10 of 13, from 719 to 741: score 34.7, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s+L +H rtH KIAA1015 719 YQCD-ICGKAFGYSSDLIQHYRTH 741 PF00096.16.fs: domain 10 of 13, from 719 to 741: score 32.7, E = 6.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +s+L +H rtH KIAA1015 719 YQCD-ICGKAFGYSSDLIQHYRTH 741 PF00096.16.fs: domain 12 of 13, from 775 to 797: score 28.3, E = 8.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+ F+ ks+L++H+r+H KIAA1015 775 HQCH-ECGRGFTLKSHLNQHQRIH 797 PF00096.16.ls: domain 12 of 13, from 775 to 797: score 30.3, E = 6.4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg+ F+ ks+L++H+r+H KIAA1015 775 HQCH-ECGRGFTLKSHLNQHQRIH 797 PF00096.16.ls: domain 13 of 13, from 803 to 825: score 27.0, E = 6.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg Fs + +L +Hlr+H KIAA1015 803 FQCK-ECGMNFSWSCSLFKHLRSH 825 PF00096.16.fs: domain 13 of 13, from 803 to 825: score 25.0, E = 5.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg Fs + +L +Hlr+H KIAA1015 803 FQCK-ECGMNFSWSCSLFKHLRSH 825 //