hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14585943/chunk_1/iprscan-20080501-14585943.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1015 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 320.8 9.7e-92 12 SM00431 263.2 2.1e-74 1 SM00349 54.4 1.4e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00431 1/1 48 157 .. 1 113 [] 263.2 2.1e-74 SM00349 1/1 220 283 .. 1 62 [] 54.4 1.4e-11 SM00355 1/12 348 370 .. 1 23 [] 24.6 0.014 SM00355 2/12 376 398 .. 1 23 [] 28.2 0.0011 SM00355 3/12 404 426 .. 1 23 [] 24.3 0.017 SM00355 4/12 432 454 .. 1 23 [] 25.4 0.0081 SM00355 5/12 551 573 .. 1 23 [] 28.0 0.0013 SM00355 6/12 579 601 .. 1 23 [] 29.3 0.00052 SM00355 7/12 607 629 .. 1 23 [] 29.6 0.00044 SM00355 8/12 635 657 .. 1 23 [] 28.2 0.0011 SM00355 9/12 663 685 .. 1 23 [] 22.5 0.06 SM00355 10/12 719 741 .. 1 23 [] 30.3 0.00027 SM00355 11/12 775 797 .. 1 23 [] 25.0 0.011 SM00355 12/12 803 825 .. 1 23 [] 25.6 0.007 Alignments of top-scoring domains: SM00431: domain 1 of 1, from 48 to 157: score 263.2, E = 2.1e-74 *->pEifRqrFRqFrYqEtsGPREALSRLRELCrqWLRPElhTKEQILEL +E+f+qrFR+F+Y+E+sGPREALS+LR+LC++WLRPElhTKEQILEL KIAA1015 48 FETFYQRFRHFQYHEASGPREALSQLRVLCCEWLRPELHTKEQILEL 94 LVLEQFLTILPgELQaWVrehhPeSGEEAVtLlEdLereLdepgqqVsah LVLEQFLTILP+E+Q WVrehhPeSGEEAV+++E+++reL+e++qq++a+ KIAA1015 95 LVLEQFLTILPEEFQPWVREHHPESGEEAVAVIENIQRELEERRQQIVAC 144 vhgqevLleemvplga<-* + +vL ++m+++ga KIAA1015 145 P---DVLPRKMATPGA 157 SM00349: domain 1 of 1, from 220 to 283: score 54.4, E = 1.4e-11 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk DVAV+F EEW++LD +Q+ LYRd +ENY+ +S+G+ + + KIAA1015 220 EEVADVAVSFILEEWGHLDQSQKSLYRDDRKENYGSITSMGYESRDN 266 pdliskL..EqgeEpwi<-* +li k+ + e w+ KIAA1015 267 MELIVKQisDDSESHWV 283 SM00355: domain 1 of 12, from 348 to 370: score 24.6, E = 0.014 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+ Cgk f +++++++H r+H KIAA1015 348 HRCSD-CGKFFLQAsNFIQHRRIH 370 SM00355: domain 2 of 12, from 376 to 398: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC + Cgks++++ +L++H+rvH KIAA1015 376 FKCGE-CGKSYNQRvHLTQHQRVH 398 SM00355: domain 3 of 12, from 404 to 426: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f+ ++L++H vH KIAA1015 404 YKCQV-CGKAFRVSsHLVQHHSVH 426 SM00355: domain 4 of 12, from 432 to 454: score 25.4, E = 0.0081 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f ++++L++H+++H KIAA1015 432 YGCNE-CGKNFGRHsHLIEHLKRH 454 SM00355: domain 5 of 12, from 551 to 573: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgksf + +L++H+r+H KIAA1015 551 HKCNE-CGKSFIQSaHLIQHQRIH 573 SM00355: domain 6 of 12, from 579 to 601: score 29.3, E = 0.00052 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cgks++++ +L++H+rvH KIAA1015 579 FRCEE-CGKSYNQRvHLTQHQRVH 601 SM00355: domain 7 of 12, from 607 to 629: score 29.6, E = 0.00044 *->ykCpigCgksfssk.aLkrHmrvH<-* y+Cp+ Cgk f+ +++L++H+ vH KIAA1015 607 YTCPL-CGKAFRVRsHLVQHQSVH 629 SM00355: domain 8 of 12, from 635 to 657: score 28.2, E = 0.0011 *->ykCpigCgksfssk.aLkrHmrvH<-* +kC++ Cgk f ++++L H+r H KIAA1015 635 FKCNE-CGKGFGRRsHLAGHLRLH 657 SM00355: domain 9 of 12, from 663 to 685: score 22.5, E = 0.06 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C + Cg+ f ++ +L++H+ H KIAA1015 663 HQCRE-CGEIFFQYvSLIEHQVLH 685 SM00355: domain 10 of 12, from 719 to 741: score 30.3, E = 0.00027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C+i Cgk f ++L++H+r+H KIAA1015 719 YQCDI-CGKAFGYSsDLIQHYRTH 741 SM00355: domain 11 of 12, from 775 to 797: score 25.0, E = 0.011 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg+ f+ k++L++H+r+H KIAA1015 775 HQCHE-CGRGFTLKsHLNQHQRIH 797 SM00355: domain 12 of 12, from 803 to 825: score 25.6, E = 0.007 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg+ fs+ +L +H+r+H KIAA1015 803 FQCKE-CGMNFSWScSLFKHLRSH 825 //