# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh00363.fasta.huge -Q ../query/KIAA1029.ptfa ./tmplib.24314 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1029, 1015 aa
 vs ./tmplib.24314 library

1986490 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 17.4189+/-0.0145; mu= -43.8637+/- 0.977
 mean_var=862.3135+/-207.580, 0's: 0 Z-trim: 15  B-trim: 9 in 2/38
 Lambda= 0.043676

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1076  ( 804 res)   hj06779                     ( 804)  354 38.2  0.0053


>>KIAA1076  ( 804 res)   hj06779                          (804 aa)
 initn: 242 init1: 157 opt: 354  Z-score: 145.8  bits: 38.2 E(): 0.0053
Smith-Waterman score: 358;  27.609% identity (44.348% similar) in 460 aa overlap (525-959:71-485)

          500       510       520       530       540       550    
KIAA10 FVEKPKVTPNPDLLDLVQTADEKRRQRDQGEVGVEEEPFALGAEASNFQQEPAPRDRASP
                                     :: .: :  :   . : ... : :     :
KIAA10 SAGPEDFEQDGEEAALAPGAPAVDSLGMEEEVDIETEAVAPEERPSMLDEPPLPVGVEEP
               50        60        70        80        90       100

          560       570       580       590       600       610    
KIAA10 AAAEEVVPEWASCLKSPRIQAKPKPKPNQNLSEASGKGAELYARRQSRMEKYVIESSSHT
       : ..:  ::  .  .   .  .:.: : .          :. ::     :.    .  : 
KIAA10 ADSREP-PEEPGLSQEGAMLLSPEP-PAK----------EVEARPPLSPER----APEHD
               110       120                  130           140    

          620       630       640        650       660       670   
KIAA10 PELARCPSPTMSLPSSWKYPTNAPGAFRVASRSPA-RTPPASLYHGYLPENGVLRPEPTK
        :.   : : : ::   . :   :   :  :  :  .:  ::  :  .:      :::  
KIAA10 LEVE--PEPPMMLPLPLQPPLPPPRPPRPPSPPPEPETTDAS--HPSVP------PEPLA
            150       160       170       180               190    

             680          690       700       710       720        
KIAA10 Q--PPYQLRPSL---FVLSPIKEPAKVSPRAASPAKPSSLDLVPNLPKGALPPSP---AL
       .  ::.   :.:   .. :   : . ..: .  : . .:  :  . :.  .: ::     
KIAA10 EDHPPH--TPGLCGSLAKSQSTETVPATPGGEPPLSGGSSGLSLSSPQ--VPGSPFSYPA
          200         210       220       230       240         250

         730       740        750       760       770       780    
KIAA10 PRPSRSSPGLYTSPGQD-SLQPTAVSPPYGGDISPVSPSRAWSPRAKQAPRPSFSTRNAG
       : :: :: ::  .::.: :. ::  : : :  . :: :  .     ...:  :    ..:
KIAA10 PSPSLSSGGLPRTPGRDFSFTPT-FSEPSGPLLLPVCPLPTGRRDERSGPLASPVLLETG
              260       270        280       290       300         

          790       800       810        820       830        840  
KIAA10 IEAQDRRESLPTSPPWTPGASRPPSSLDGWV-SPGPWEPGRGSSMSS-PPPLPPPPPMSP
       .        ::   :  :     :. : . . .: :  :   . ..: :::.   :   :
KIAA10 LP-------LPLPLP-LPLPLALPAVLRAQARAPTPLPPLLPAPLASCPPPMKRKPG-RP
     310               320       330       340       350        360

            850       860       870       880       890            
KIAA10 SWSERSVSPLRPETEARPPSRQLQALLARNIINAARRKSASPRSAGAENPR---------
         :  :.  :     .:::.    : :.:...     .  .:   ....::         
KIAA10 RRSPPSMLSLDGPL-VRPPA---GAALGRELLLLPG-QPQTPVFPSTHDPRTVTLDFRNA
              370           380       390        400       410     

             900       910       920       930         940         
KIAA10 --PFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPGAAFAPIPRS--PLPAGPSSCTS
         :  ::  :: :::::::::   .  : .  .   :. :. : ::.   .       ..
KIAA10 GIPAPPPPLPPQPPPPPPPPPVEPTKLPFKELDNQWPSEAIPPGPRGRDEVTEEYMELAK
         420       430       440       450       460       470     

     950       960       970       980       990      1000         
KIAA10 PRSPLPAPPRPFLYRRSPTDSDVSLDSEDSGAKSPGILGYNICPRGWNGSLRLKRGSLPA
        :.:   ::.                                                  
KIAA10 SRGPWRRPPKKRHEDLVPPAGSPELSPPQPLFRPRSEFEEMTILYDIWNGGIDEEDIRFL
         480       490       500       510       520       530     




1015 residues in 1 query   sequences
1986490 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:06:25 2008 done: Thu Dec 18 15:06:26 2008
 Total Scan time:  0.690 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]