hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15263307/chunk_1/iprscan-20080501-15263307.nocrc
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Query sequence: KIAA1031
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00028                                                  41.6      1e-07   2
SM00356                                                  35.4    7.6e-06   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00028     1/2      45    78 ..     1    34 []    28.4    0.001
SM00028     2/2      79   112 ..     1    34 []    13.3       16
SM00356     1/4     444   470 ..     1    31 []     5.1       25
SM00356     2/4     574   600 ..     1    31 []     5.3       24
SM00356     3/4     719   744 ..     1    31 []     8.4      9.6
SM00356     4/4     851   876 ..     1    31 []    16.6      0.9

Alignments of top-scoring domains:
SM00028: domain 1 of 2, from 45 to 78: score 28.4, E = 0.001
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       + + n++ +y+ +g y++A+e+ ekAL ld +    
    KIAA1031    45    CKLHVNRAACYFTMGLYEKALEDSEKALGLDSES    78   

SM00028: domain 2 of 2, from 79 to 112: score 13.3, E = 16
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++al++++ a+  lg+++eA e+ +++    P++   
    KIAA1031    79    IRALFRKARALNELGRHKEAYECSSRCSLALPHD    112  

SM00356: domain 1 of 4, from 444 to 470: score 5.1, E = 25
                   *->kyktelCkfFarrGppgyCpyGdrCkfa.Hpl<-*
                      +y   lCk+   +   + C+yGd+C fa H +   
    KIAA1031   444    SYY--LCKDM-INK--QDCKYGDNCTFAyHQE    470  

SM00356: domain 2 of 4, from 574 to 600: score 5.3, E = 24
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       ++  +C++  r+G    C + d+C+faH+    
    KIAA1031   574    HFQFDVCRHEVRYG----CLREDSCHFAHSF    600  

SM00356: domain 3 of 4, from 719 to 744: score 8.4, E = 9.6
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       y   lC   a++G+   C y  +C faH++   
    KIAA1031   719    QYD--LCI-HAQNGR--KCQYVGNCSFAHSP    744  

SM00356: domain 4 of 4, from 851 to 876: score 16.6, E = 0.9
                   *->kyktelCkfFarrGppgyCpyGdrCkfaHpl<-*
                       ++  lC++  ++G  + Cp Gd+C+ aH+    
    KIAA1031   851    EFR--LCDRL-QKG--KACPDGDKCRCAHGQ    876  

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