hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15281682/chunk_1/iprscan-20080501-15281682.nocrc
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Query sequence: KIAA1032
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                 190.8    1.3e-52   3
SM00109                                                  75.8    5.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/3       2    93 ..     1    92 []    48.4  9.1e-10
SM00109    1/1     553   602 ..     1    61 []    75.8  5.3e-18
SM00239    2/3     676   783 ..     1    92 []    88.1  1.1e-21
SM00239    3/3    1545  1651 ..     1    92 []    54.3  1.5e-11

Alignments of top-scoring domains:
SM00239: domain 1 of 3, from 2 to 93: score 48.4, E = 9.1e-10
                   *->tLtvkiisArnLp.....DPYVkvs.....kTkvvkktlsgfNPvWn
                      +L+v +++A+      + + YV+++ ++ + T +  +      P W+
    KIAA1032     2    LLCVGVKKAKFDGaqekfNTYVTLKvqnvkSTTIAVRGS---QPSWE 45   

                   EesetFeFevpp..s.LeieVyDk.....dfiGrvtippnnahqhsadgl
                   +    F+Fe+++ + +L++eV++k+   +  +G+v+ip            
    KIAA1032    46 Q---DFMFEINRldLgLTVEVWNKgliwdTMVGTVWIP------------ 80   

                   ihlsell.ggrh.kl<-*
                     l++++++++ ++    
    KIAA1032    81 --LRTIRqSNEEgPG    93   

SM00109: domain 1 of 1, from 553 to 602: score 75.8, E = 5.3e-18
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+ +t ++pt+C+ C+ ++wg+++q     g+rC+eC+vkcH+kC
    KIAA1032   553    HNFEVWTAtTPTYCYECEGLLWGIARQ-----GMRCTECGVKCHEKC 594  

                   aekvpaqshksglsC<-*
                   ++ ++a       +C   
    KIAA1032   595 QDLLNA-------DC    602  

SM00239: domain 2 of 3, from 676 to 783: score 88.1, E = 1.1e-21
                   *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN
                      ++ +++++A++L  +++++++DPYV+v+ ++++++Tk++ ++l   N
    KIAA1032   676    KISITVVCAQGLQakdktgssDPYVTVQvgktkkRTKTIYGNL---N 719  

                   PvWnEesetFeFevpp..s.LeieVyDk.................dfiGr
                   PvW+E    F+Fe+++++++++++V+D++++ +++ + + +++++df+G+
    KIAA1032   720 PVWEE---NFHFECHNssDrIKVRVWDEdddiksrvkqrfkresdDFLGQ 766  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++i               +++l ++     +   
    KIAA1032   767 TIIE--------------VRTLSgEMDVwYN    783  

SM00239: domain 3 of 3, from 1545 to 1651: score 54.3, E = 1.5e-11
                   *->tLtvkiisArnLp.......DPYVkvs.............kTkvvkk
                      ++tvk++ A++L+  +++   P+++v   +++ ++++++  Tk + +
    KIAA1032  1545    KVTVKVVAANDLKwqtsgifRPFIEVNiigpqlsdkkrkfATKSKNN 1591 

                   tlsgfNPvWnEesetFeFevpp......s.LeieVyDk......dfiGrv
                   +     P++nE   +F+F+++ + +++  +L++ V+D+   ++++ +G +
    KIAA1032  1592 SW---APKYNE---SFQFTLSAdagpecYeLQVCVKDYcfaredRTVGLA 1635 

                   tippnnahqhsadglihlsell.ggrh.kl<-*
                   ++               l+el ++g    +   
    KIAA1032  1636 VLQ--------------LRELAqRGSAaCW    1651 

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