hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15314826/chunk_1/iprscan-20080501-15314826.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1034
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02376.6.ls CUT domain                                     252.8    6.7e-73   2
PF02376.6.fs CUT domain                                     249.6    6.1e-72   2
PF00046.19.ls Homeobox domain                                 20.5    3.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02376.6.fs   1/2     383   465 ..     1    88 []   133.4  9.5e-38
PF02376.6.ls   1/2     383   465 ..     1    88 []   135.4  1.5e-37
PF02376.6.ls   2/2     501   588 ..     1    88 []   117.4  3.8e-32
PF02376.6.fs   2/2     503   588 ..     1    88 []   116.1  8.9e-33
PF00046.19.ls   1/1     643   700 ..     1    57 []    20.5  3.3e-05

Alignments of top-scoring domains:
PF02376.6.fs: domain 1 of 2, from 383 to 465: score 133.4, E = 9.5e-38
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      n++v+ ++     +I+++V++eLkra++sQ++FA+++++++QG+lS+
    KIAA1034   383    NSSVEVSP-----DIYQQVRDELKRASVSQAVFARVAFNRTQGLLSE 424  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +Lr+++++ +++q++++++r+Mqn+L++p+++rd+iyq+e+   
    KIAA1034   425 ILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERDRIYQDER    465  

PF02376.6.ls: domain 1 of 2, from 383 to 465: score 135.4, E = 1.5e-37
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                      n++v+ ++     +I+++V++eLkra++sQ++FA+++++++QG+lS+
    KIAA1034   383    NSSVEVSP-----DIYQQVRDELKRASVSQAVFARVAFNRTQGLLSE 424  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   +Lr+++++ +++q++++++r+Mqn+L++p+++rd+iyq+e+   
    KIAA1034   425 ILRKEEDPRTASQSLLVNLRAMQNFLNLPEVERDRIYQDER    465  

PF02376.6.ls: domain 2 of 2, from 501 to 588: score 117.4, E = 3.8e-32
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                        +v+  + ++Ta I++++++e+kra++sQ+lFA++++++SQG+l++
    KIAA1034   501    PIKVDGANINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCE 547  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LLr+++ +s+++++++e++  ++++L++p+ +rd iy+ e+   
    KIAA1034   548 LLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEES    588  

PF02376.6.fs: domain 2 of 2, from 503 to 588: score 116.1, E = 8.9e-33
                   *->nqqvgmneeldTaeIarrVkeeLkranIsQrlFAekvLGlSQGslSd
                        +v+  + ++Ta I++++++e+kra++sQ+lFA++++++SQG+l++
    KIAA1034   503    --KVDGANINITAAIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCE 547  

                   LLrrPKPWskltqkGRepFrrMqnWLqdpnavrdliyqqek<-*
                   LLr+++ +s+++++++e++  ++++L++p+ +rd iy+ e+   
    KIAA1034   548 LLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEES    588  

PF00046.19.ls: domain 1 of 1, from 643 to 700: score 20.5, E = 3.3e-05
                   *->rrkRTtftpeQleeLEkeFqk.nrYPsreeReeLAkkLgLterqVkv
                       r+RT ++ e l +L+ + +    YP+ e++  L+++L+L++  +  
    KIAA1034   643    PRSRTKISLEALGILQSFIHDvGLYPDQEAIHTLSAQLDLPKHTIIK 689  

                   WFQNRRaKwKk<-*
                    FQN R+  K    
    KIAA1034   690 FFQNQRYHVKH    700  

//