hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15364878/chunk_1/iprscan-20080501-15364878.nocrc
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Query sequence: KIAA1037
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07719.7.ls Tetratricopeptide repeat                        35.6    1.6e-07   3
PF07719.7.fs Tetratricopeptide repeat                        30.4    1.8e-07   3
PF00515.18.ls Tetratricopeptide repeat                        30.5    5.5e-06   3
PF00400.22.fs WD domain, G-beta repeat                        21.9    3.3e-05   2
PF00400.22.ls WD domain, G-beta repeat                        23.7    0.00062   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.ls   1/2      15    54 ..     1    38 []    22.0    0.002
PF00400.22.fs   1/2      15    54 ..     1    38 []    20.0  0.00012
PF00515.18.ls   1/3     253   286 ..     1    34 []    12.3     0.17
PF00515.18.fs   1/3     260   286 ..     8    34 .]    12.8    0.013
PF00515.18.fs   2/3     287   321 ..     1    32 [.    14.5   0.0039
PF00515.18.ls   2/3     287   323 ..     1    34 []    15.8    0.064

Alignments of top-scoring domains:
PF00400.22.ls: domain 1 of 2, from 15 to 54: score 22.0, E = 0.002
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +e ++ +++Ht+ V  +a +p  ++++ s+ +Dg i+ +d   
    KIAA1037    15    KETIhMFgDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYD    54   

PF00400.22.fs: domain 1 of 2, from 15 to 54: score 20.0, E = 0.00012
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +e ++ +++Ht+ V  +a +p  ++++ s+ +Dg i+ +d   
    KIAA1037    15    KETIhMFgDHTNRVKRIATAPMWPNTFWSAAEDGLIRQYD    54   

PF00515.18.ls: domain 1 of 3, from 253 to 286: score 12.3, E = 0.17
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                       e  ++ +n  ++ +++ +Ai+ y kA++  P+n   
    KIAA1037   253    LERVKQQANEAFACQQWTQAIQLYSKAVQRAPHN    286  

PF00515.18.fs: domain 1 of 3, from 260 to 286: score 12.8, E = 0.013
                   *->GnaylklgkydeAieayekALeldPnn<-*
                      +n  ++ +++ +Ai+ y kA++  P+n   
    KIAA1037   260    ANEAFACQQWTQAIQLYSKAVQRAPHN    286  

PF00515.18.fs: domain 2 of 3, from 287 to 321: score 14.5, E = 0.0039
                   *->aeayynlGnaylkl...gkydeAieayekALeldP<-*
                      a  y n+++ay+k++ +g++ +A+ ++ kA++l+P   
    KIAA1037   287    AMLYGNRAAAYMKRkwdGDHYDALRDCLKAISLNP    321  

PF00515.18.ls: domain 2 of 3, from 287 to 323: score 15.8, E = 0.064
                   *->aeayynlGnaylkl...gkydeAieayekALeldPnn<-*
                      a  y n+++ay+k++ +g++ +A+ ++ kA++l+P +   
    KIAA1037   287    AMLYGNRAAAYMKRkwdGDHYDALRDCLKAISLNPCH    323  

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