hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15364878/chunk_1/iprscan-20080501-15364878.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1037
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                  30.1    0.00029   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/3     253   286 ..     1    34 []    14.8       10
SM00028    2/3     287   323 ..     1    34 []    13.6       14
SM00028    3/3     324   357 ..     1    34 []     1.7  3.2e+02

Alignments of top-scoring domains:
SM00028: domain 1 of 3, from 253 to 286: score 14.8, E = 10
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       e  ++++n  ++  ++ +Ai+ y+kA++ +P+n   
    KIAA1037   253    LERVKQQANEAFACQQWTQAIQLYSKAVQRAPHN    286  

SM00028: domain 2 of 3, from 287 to 323: score 13.6, E = 14
                   *->aealynlGnaylkl...gdydeAieyyekALeldPnn<-*
                      a  + n++ ay+k++ +gd+ +A+ ++ kA++l+P +   
    KIAA1037   287    AMLYGNRAAAYMKRkwdGDHYDALRDCLKAISLNPCH    323  

SM00028: domain 3 of 3, from 324 to 357: score 1.7, E = 3.2e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +a+++l+ +++ l+  +eA+e+++      P+    
    KIAA1037   324    LKAHFRLARCLFELKYVAEALECLDDFKGKFPEQ    357  

//