hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15400408/chunk_1/iprscan-20080501-15400408.nocrc
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Query sequence: KIAA1039
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02145.6.fs Rap/ran-GAP                                    361.6   2.9e-109   1
PF02145.6.ls Rap/ran-GAP                                    355.9   6.1e-104   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02145.6.fs   1/1       1   178 [.    11   192 .]   361.6 2.9e-109
PF02145.6.ls   1/1       1   178 [.     1   192 []   355.9 6.1e-104

Alignments of top-scoring domains:
PF02145.6.fs: domain 1 of 1, from 1 to 178: score 361.6, E = 2.9e-109
                   *->FdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGthsvYttykdme
                      F+eFL+lLG+ ++L+df++   +rGGLDv++++TG +svYtt++d+e
    KIAA1039     1    FKEFLDLLGDTITLQDFKG---FRGGLDVTHGQTGVESVYTTFRDRE 44   

                   imFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGekpFspdtIrSh
                   imFHVST+LP+t++d+qqLqrKRHIGNDiV+I+Fqe+++ pF+pd+I+S+
    KIAA1039    45 IMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENT-PFVPDMIASN 93   

                   FqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkgavfdknaeFr
                   F+h++++V++++p+te + YkVsvt+r+Dvp fgp+lp + vf+k++eFr
    KIAA1039    94 FLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFR 143  

                   eflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   eflL+kl Naena+ k+ kFakl+ rtR++lL +L   
    KIAA1039   144 EFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNL    178  

PF02145.6.ls: domain 1 of 1, from 1 to 178: score 355.9, E = 6.1e-104
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                                F+eFL+lLG+ ++L+df++   +rGGLDv++++TG +
    KIAA1039     1    ----------FKEFLDLLGDTITLQDFKG---FRGGLDVTHGQTGVE 34   

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   svYtt++d+eimFHVST+LP+t++d+qqLqrKRHIGNDiV+I+Fqe+++ 
    KIAA1039    35 SVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENT- 83   

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF+pd+I+S+F+h++++V++++p+te + YkVsvt+r+Dvp fgp+lp +
    KIAA1039    84 PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSP 133  

                   avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                    vf+k++eFreflL+kl Naena+ k+ kFakl+ rtR++lL +L   
    KIAA1039   134 PVFQKGPEFREFLLTKLTNAENACCKSDKFAKLEDRTRAALLDNL    178  

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