HUGE

Gene/Protein Characteristic Table for KIAA1040

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Mapping

Product ID :	ORK00169
Accession No. :	AB028963
Description :	MON2 homolog.
HUGO Gene Name :	MON2 homolog (S. cerevisiae) (MON2)
Clone Name :	hh15271 [Vector Info]
Flexi ORF Clone :	pF1KA1040
Source :	Human adult brain
Note :	We replaced fh02456 and fh02456s1, former representative clones for KIAA1040 with hh15271. (2002/5/10,2002/5/10)

Features of the cloned DNA sequence	Description

Length: 6387 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 871 bp

Genome contig ID gi89161190f_61046896
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CATACCTCATTTCTTTAAACAGCTCTCCAAGCTTT
Flanking genome sequence
(226773 - 226822)
----+----*----+----*----+----*----+----*----+----*
CACTGAAGTCTGTCTGTTTTTTATATTGGCTGTCTGGATTTTAAAGACTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 f 61146896 61273667 35 99.9 Perfect prediction

Features of the protein sequence	Description

Length: 1736 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q7Z3U7	100.0	Protein MON2 ho...	Homo sapiens
XP_001165756	99.9	homolog of yeas...	Pan troglodytes
NP_055841	99.9	MON2 homolog [H...	Homo sapiens
BAC11707	99.9	SF21 protein [H...	Homo sapiens
XP_001165820	99.8	homolog of yeas...	Pan troglodytes

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR015403 866 951 PF09324 Protein of unknown function DUF1981

IPR000357 1159 1195 PF02985 HEAT

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR015403	866	951	PF09324	Protein of unknown function DUF1981
IPR000357	1159	1195	PF02985	HEAT

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 571 MVNACWCGLLAALSLLLDASTDE 593 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	571	MVNACWCGLLAALSLLLDASTDE	593	PRIMARY	23

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GTTAATTATCCCTCCCATCAG
Primer_r	: TTCTTGGCAGCTGTTGTTGGC
PCR product length	: 146 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	YES

Length of 3'UTR	871 bp
Genome contig ID	gi89161190f_61046896
PolyA signal sequence (None)	+--------+--------+----*----+---- CATACCTCATTTCTTTAAACAGCTCTCCAAGCTTT
Flanking genome sequence (226773 - 226822)	----+--------+--------+--------+--------+----* CACTGAAGTCTGTCTGTTTTTTATATTGGCTGTCTGGATTTTAAAGACTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	f	61146896	61273667	35	99.9	Perfect prediction

Gene/Protein Characteristic Table for KIAA1040

Features of the cloned DNA sequence

Features of the protein sequence

RH mapping information