# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh02877.fasta.huge -Q ../query/KIAA1042.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1042, 1019 aa vs ./tmplib.24314 library 1986486 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.6072+/-0.00868; mu= 0.1829+/- 0.589 mean_var=272.6209+/-67.841, 0's: 0 Z-trim: 9 B-trim: 79 in 1/39 Lambda= 0.077677 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0549 ( 469 res) hh00779 ( 469) 636 85.0 2.5e-17 >>KIAA0549 ( 469 res) hh00779 (469 aa) initn: 910 init1: 282 opt: 636 Z-score: 403.0 bits: 85.0 E(): 2.5e-17 Smith-Waterman score: 1119; 46.708% identity (66.049% similar) in 486 aa overlap (547-1009:23-464) 520 530 540 550 560 570 KIAA10 GSDIGNVVLDNKTNSIILETEAADLGNDERSKKPGTPGTPGSHDLETALRRLSLRRENYL :.: : :: :. :: :::.::::::.::: KIAA05 LQQTEDKSLLNQGSSSEEVAGSSQKMGQPGPSGDSDLATALHRLSLRRQNYL 10 20 30 40 50 580 590 600 610 620 630 KIAA10 SERRFFEEEQERKLQELAEKGELRSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYL ::..:: :: .::.: ::.. : :: .:::::. :: : . ::.: .:. : :... KIAA05 SEKQFFAEEWQRKIQVLADQKEGVSGCVTPTESLASLCTTQ--SEITDLSSAS-CLRGFM 60 70 80 90 100 640 650 660 670 680 690 KIAA10 PEKLQIVKPLEGSATLHHWQQLAQPHLGGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEE ::::::::::::: ::.::::::::.:: ::::::::.:::: : : .: ..:.:: KIAA05 PEKLQIVKPLEGSQTLYHWQQLAQPNLGTILDPRPGVITKGFTQLPGD--AIYHISDLEE 110 120 130 140 150 160 700 710 720 730 KIAA10 DDTGD---HISLP-----RLATSTPVQH----PETSAH--------HPGKCMSQTNSTFT :. ... : .:.:: :: : ::: .::::.: :::::: KIAA05 DEEEGITFQVQQPLEVEEKLSTSKPVTGIFLPPITSAGGPVTVATANPGKCLSCTNSTFT 170 180 190 200 210 220 740 750 760 770 780 790 KIAA10 FTTCRILHPSDELTRVTPSLNSAPTPACGST-SHLKSTPVATPCTPRRLSLAESFTNTRE ::::::::::: .:.:::: .. :. .:::. : ..: : .: :::..::.:: :. KIAA05 FTTCRILHPSD-ITQVTPS-SGFPSLSCGSSGSSSSNTAVNSPALSYRLSIGESITNRRD 230 240 250 260 270 280 800 810 820 830 840 850 KIAA10 STTTMSTSLGLVWLLKERGISAAVY-DPQSWDRAGRGSLLHSYTPKMAVIPSTPPNSPMQ ::::.:....:. ::.:::::: :: .: : . . :: .::::::::: . KIAA05 STTTFSSTMSLAKLLQERGISAKVYHSPISENPL-------QPLPKSLAIPSTPPNSPSH 290 300 310 320 330 860 870 880 890 900 910 KIAA10 TPTSSPPSFEFKCTSPPYDNFLASKPASSILREVREKNVRSSESQTDVSVSNLNLVDKVR .: :: :: . .:::::.:: ..:.:. ..: :.. ::. ..::::... KIAA05 SPCPSPLPFEPRVHLS--ENFLASRPAETFLQEMY--GLRPSRNPPDVGQLKMNLVDRLK 340 350 360 370 380 390 920 930 940 950 960 970 KIAA10 RFGVAKVV-NSGRAHVPTLTEEQGPLLCGPPGPAPALVPRGLVPEGLPLRCPTVTSAIGG :.:.:.:: : : . : . :: : :. . : .: .:: KIAA05 RLGIARVVKNPGAQENGRCQEAE----IGPQKPDSAVY----LNSG--------SSLLGG 400 410 420 430 980 990 1000 1010 KIAA10 LQLNSGIRRNRSFPTMVGSSMQMKAPVTLTSGILMGAKLSKQTSLR : :::.:.:...:: . ::: ::. :: KIAA05 L------RRNQSLPVIMGS---FAAPVC-TSSPKMGVLKED 440 450 460 1019 residues in 1 query sequences 1986486 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:06:53 2008 done: Thu Dec 18 15:06:53 2008 Total Scan time: 0.680 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]