hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15451340/chunk_1/iprscan-20080501-15451340.nocrc
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Query sequence: KIAA1042
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04849.3.ls HAP1 N-terminal conserved region               693.5   1.4e-205   1
PF04849.3.fs HAP1 N-terminal conserved region               691.5   5.6e-205   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04849.3.fs   1/1     113   420 ..     1   336 []   691.5 5.6e-205
PF04849.3.ls   1/1     113   420 ..     1   336 []   693.5 1.4e-205

Alignments of top-scoring domains:
PF04849.3.fs: domain 1 of 1, from 113 to 420: score 691.5, E = 5.6e-205
                   *->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
                      leeqlp+Yklradt+y   gy+++dW+++  pl++p+a+++l++eq+
    KIAA1042   113    LEEQLPHYKLRADTIY---GYDHDDWLHT--PLISPDANIDLTTEQI 154  

                   retlkYflLCanRVsqmtktydDIdavtrLLEEKerDLELAArIGQsLLk
                   +etlkYflLCa+RV+qmtkty+DIdavtrLLEEKerDLELAArIGQsLLk
    KIAA1042   155 EETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLK 204  

                   qNkvLeerNekLEeqLgkarDeivQLrHELnkkdELLrvySdadDDgEdE
                   +Nk+L+erNe+LEeq++++r+e++QLrHEL++kdELL++y++a++++E+ 
    KIAA1042   205 KNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEP- 253  

                   EDEEEEEGEEEEResqcstplkhnesysapKPPtkaeTlqkslqLEaLqe
                                es+cstplk+nes+s         ++q++++L++Lq+
    KIAA1042   254 -------------ESVCSTPLKRNESSS---------SVQNYFHLDSLQK 281  

                   KLKsLeeENerLRsEAsqLktETityEeKEqqLvldcVkqLreANdQmas
                   KLK+LeeEN++LRsEAsqLktETityEeKEqqLv+dcVk+Lr+AN+Q+as
    KIAA1042   282 KLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIAS 331  

                   LseeLekkteelerQqEeitkLlaeiadlqkklkslsvekEElqqhLaae
                   +seeL+kkte+++rQqEeit+Ll++i+dlqkk+k+++ve+EEl+qhL+a+
    KIAA1042   332 ISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAA 381  

                   KdaqrqltaElkElqDryaEclamlhEaQeelKklRsrS<-*
                   KdaqrqltaEl+El+D+yaEc++mlhEaQeelK+lR+++   
    KIAA1042   382 KDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKT    420  

PF04849.3.ls: domain 1 of 1, from 113 to 420: score 693.5, E = 1.4e-205
                   *->leeqlpkYklradtlyfmigyanedWsdpaaplsrppavsglspeqt
                      leeqlp+Yklradt+y   gy+++dW+++  pl++p+a+++l++eq+
    KIAA1042   113    LEEQLPHYKLRADTIY---GYDHDDWLHT--PLISPDANIDLTTEQI 154  

                   retlkYflLCanRVsqmtktydDIdavtrLLEEKerDLELAArIGQsLLk
                   +etlkYflLCa+RV+qmtkty+DIdavtrLLEEKerDLELAArIGQsLLk
    KIAA1042   155 EETLKYFLLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLK 204  

                   qNkvLeerNekLEeqLgkarDeivQLrHELnkkdELLrvySdadDDgEdE
                   +Nk+L+erNe+LEeq++++r+e++QLrHEL++kdELL++y++a++++E+ 
    KIAA1042   205 KNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEP- 253  

                   EDEEEEEGEEEEResqcstplkhnesysapKPPtkaeTlqkslqLEaLqe
                                es+cstplk+nes+s         ++q++++L++Lq+
    KIAA1042   254 -------------ESVCSTPLKRNESSS---------SVQNYFHLDSLQK 281  

                   KLKsLeeENerLRsEAsqLktETityEeKEqqLvldcVkqLreANdQmas
                   KLK+LeeEN++LRsEAsqLktETityEeKEqqLv+dcVk+Lr+AN+Q+as
    KIAA1042   282 KLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIAS 331  

                   LseeLekkteelerQqEeitkLlaeiadlqkklkslsvekEElqqhLaae
                   +seeL+kkte+++rQqEeit+Ll++i+dlqkk+k+++ve+EEl+qhL+a+
    KIAA1042   332 ISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAA 381  

                   KdaqrqltaElkElqDryaEclamlhEaQeelKklRsrS<-*
                   KdaqrqltaEl+El+D+yaEc++mlhEaQeelK+lR+++   
    KIAA1042   382 KDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKT    420  

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