hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-15465801/chunk_1/iprscan-20080501-15465801.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1043 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00028 436.9 1.1e-126 20 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00028 1/20 2 32 .. 1 34 [] 16.7 3.3 SM00028 2/20 39 72 .. 1 34 [] 29.4 0.00049 SM00028 3/20 79 112 .. 1 34 [] 17.1 2.4 SM00028 4/20 119 152 .. 1 34 [] 13.5 15 SM00028 5/20 159 192 .. 1 34 [] 23.1 0.038 SM00028 6/20 199 232 .. 1 34 [] 27.7 0.0016 SM00028 7/20 239 272 .. 1 34 [] 29.0 0.00064 SM00028 8/20 279 312 .. 1 34 [] 31.7 0.0001 SM00028 9/20 319 352 .. 1 34 [] 15.2 9 SM00028 10/20 359 392 .. 1 34 [] 17.9 1.5 SM00028 11/20 399 432 .. 1 34 [] 18.2 1.2 SM00028 12/20 439 472 .. 1 34 [] 26.1 0.005 SM00028 13/20 479 512 .. 1 34 [] 15.5 7.8 SM00028 14/20 522 555 .. 1 34 [] 35.5 7.2e-06 SM00028 15/20 562 595 .. 1 34 [] 22.0 0.085 SM00028 16/20 602 635 .. 1 34 [] 31.3 0.00013 SM00028 17/20 642 675 .. 1 34 [] 18.5 0.91 SM00028 18/20 682 715 .. 1 34 [] 15.5 7.5 SM00028 19/20 722 755 .. 1 34 [] 23.0 0.042 SM00028 20/20 762 795 .. 1 34 [] 9.9 38 Alignments of top-scoring domains: SM00028: domain 1 of 20, from 2 to 32: score 16.7, E = 3.3 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* l n+G +y ++gd++ A+++ e+ L+++ + KIAA1043 2 ---LGNMGAVYIAMGDFENAVQCHEQHLKIAKDL 32 SM00028: domain 2 of 20, from 39 to 72: score 29.4, E = 0.00049 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a++nlG ay+ + ++d+A+ y + +Lel+ + KIAA1043 39 ARAYSNLGSAYHYRRNFDKAMSYHNYVLELAQEL 72 SM00028: domain 3 of 20, from 79 to 112: score 17.1, E = 2.4 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ lG+a + + d++ A +y e+ L ++++ KIAA1043 79 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL 112 SM00028: domain 4 of 20, from 119 to 152: score 13.5, E = 15 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a +nlG ++ +gdyd A++ + L ++ + KIAA1043 119 GRASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL 152 SM00028: domain 5 of 20, from 159 to 192: score 23.1, E = 0.038 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ n+Gnay +lg yd+A++y ++ L++ + KIAA1043 159 GRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV 192 SM00028: domain 6 of 20, from 199 to 232: score 27.7, E = 0.0016 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a ++ nl++ay +lg +d A+++y+ L ++++ KIAA1043 199 ASTHGNLAVAYQALGAHDRALQHYQNHLNIAREL 232 SM00028: domain 7 of 20, from 239 to 272: score 29.0, E = 0.00064 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+al+nlGn + ++g+y +A yye+ L+l+P+ KIAA1043 239 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL 272 SM00028: domain 8 of 20, from 279 to 312: score 31.7, E = 0.0001 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +++ nlG a++ lg+y+eA++yye+ L+l+ + KIAA1043 279 GKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDL 312 SM00028: domain 9 of 20, from 319 to 352: score 15.2, E = 9 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a++nlG+a+ +l ++ +A+e+ + L+l+ + KIAA1043 319 AKAYCNLGLAFKALLNFSKAEECQKYLLSLAQSL 352 SM00028: domain 10 of 20, from 359 to 392: score 17.9, E = 1.5 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +al nlG ++ ++d++ Ai++ye+ L l+ + KIAA1043 359 FRALGNLGDIFICKKDINGAIKFYEQQLGLAHQV 392 SM00028: domain 11 of 20, from 399 to 432: score 18.2, E = 1.2 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a a+ lG ay+ +yd+A+ y ++ Le+ + KIAA1043 399 ASAYAALGTAYRMIQKYDKALGYHTQELEVYQEL 432 SM00028: domain 12 of 20, from 439 to 472: score 26.1, E = 0.005 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ l+ +y++lg+y +A ++ye+ L+l + KIAA1043 439 CRAHGHLAAVYMALGKYTMAFKCYEEQLDLGQKL 472 SM00028: domain 13 of 20, from 479 to 512: score 15.5, E = 7.8 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+++ n+G ++++ +eAi y+e+ L++ + KIAA1043 479 AQVYGNMGITKMNMNVMEEAIGYFEQQLAMLQQL 512 SM00028: domain 14 of 20, from 522 to 555: score 35.5, E = 7.2e-06 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ nlG +y++lgdy+eAi+yye+ L+++ + KIAA1043 522 GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSL 555 SM00028: domain 15 of 20, from 562 to 595: score 22.0, E = 0.085 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a+ lGn ++++g +++A+ ++ek L ++ + KIAA1043 562 AKAYRGLGNGHRAMGSLQQALVCFEKRLVVAHEL 595 SM00028: domain 16 of 20, from 602 to 635: score 31.3, E = 0.00013 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a+a+ lG ++ +lg+y++Ai ++e+ L ++++ KIAA1043 602 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 635 SM00028: domain 17 of 20, from 642 to 675: score 18.5, E = 0.91 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++a + lG +y ++g+yd A++y + L+++++ KIAA1043 642 SDAACGLGGVYQQMGEYDTALQYHQLDLQIAEET 675 SM00028: domain 18 of 20, from 682 to 715: score 15.5, E = 7.5 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* +a+ nlG+ y++lg ++ A+ y e+ L+++ + KIAA1043 682 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQM 715 SM00028: domain 19 of 20, from 722 to 755: score 23.0, E = 0.042 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* ++ lG +++l +y +A+ y+++ L+l+++ KIAA1043 722 TVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL 755 SM00028: domain 20 of 20, from 762 to 795: score 9.9, E = 38 *->aealynlGnaylklgdydeAieyyekALeldPnn<-* a++ lG+++ + g+++eA + +A +l ++ KIAA1043 762 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETI 795 //