hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-15533964/chunk_1/iprscan-20080501-15533964.nocrc
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Query sequence: KIAA1047
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00249.21.ls   Myb-like DNA-binding domain             106.5    7.1e-29   2
PF00249.21.fs   Myb-like DNA-binding domain             103.2    7.3e-28   2

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00249.21.fs     1/2     448   493 ..     1    65 []    45.9  1.5e-11
PF00249.21.ls     1/2     448   493 ..     1    65 []    47.5  4.1e-11
PF00249.21.fs     2/2     636   681 ..     1    65 []    57.3  1.2e-14
PF00249.21.ls     2/2     636   681 ..     1    65 []    59.0  1.4e-14

Alignments of top-scoring domains:
PF00249.21.fs: domain 1 of 2, from 448 to 493: score 45.9, E = 1.5e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt++E+e++++ + +h+k+           + +Ia +l+     
    KIAA1047   448    MNVWTDHEKEIFKDKFIQHPKN-----------FGLIASYLE----- 478  

                   nvlgrtaeqcklryykyk<-*
                      ++++ +c+l+yy +k   
    KIAA1047   479 ---RKSVPDCVLYYYLTK    493  

PF00249.21.ls: domain 1 of 2, from 448 to 493: score 47.5, E = 4.1e-11
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      +++Wt++E+e++++ + +h+k+           + +Ia +l+     
    KIAA1047   448    MNVWTDHEKEIFKDKFIQHPKN-----------FGLIASYLE----- 478  

                   nvlgrtaeqcklryykyk<-*
                      ++++ +c+l+yy +k   
    KIAA1047   479 ---RKSVPDCVLYYYLTK    493  

PF00249.21.fs: domain 2 of 2, from 636 to 681: score 57.3, E = 1.2e-14
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++rWt+eE+e  ++++ +hG +           W+ Ia+++g     
    KIAA1047   636    TSRWTEEEMEVAKKGLVEHGRN-----------WAAIAKMVG----- 666  

                   nvlgrtaeqcklryykyk<-*
                      +++  qck++y +yk   
    KIAA1047   667 ---TKSEAQCKNFYFNYK    681  

PF00249.21.ls: domain 2 of 2, from 636 to 681: score 59.0, E = 1.4e-14
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                      ++rWt+eE+e  ++++ +hG +           W+ Ia+++g     
    KIAA1047   636    TSRWTEEEMEVAKKGLVEHGRN-----------WAAIAKMVG----- 666  

                   nvlgrtaeqcklryykyk<-*
                      +++  qck++y +yk   
    KIAA1047   667 ---TKSEAQCKNFYFNYK    681  

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