# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh05049.fasta.huge -Q ../query/KIAA1053.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1053, 508 aa vs ./tmplib.24314 library 1986997 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.8398+/-0.00645; mu= -0.3982+/- 0.437 mean_var=171.3853+/-40.958, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.097969 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0579 ( 910 res) bg00015 ( 910) 194 39.6 0.0011 >>KIAA0579 ( 910 res) bg00015 (910 aa) initn: 146 init1: 111 opt: 194 Z-score: 157.7 bits: 39.6 E(): 0.0011 Smith-Waterman score: 203; 25.694% identity (54.167% similar) in 288 aa overlap (103-381:247-520) 80 90 100 110 120 130 KIAA10 DSGICINASNWQDKSMGCENGHVPLYSSSSVPTTINTIGTSTSTNVPAWLKSLRLHKYAA .:....: :. .... ::..:::::: KIAA05 AAPLPHCSHAGSAGSALAYRTQMDTSPAILMPSSLQTPQTQEQNGILDWLRKLRLHKYYP 220 230 240 250 260 270 140 150 160 170 180 KIAA10 LFSQMTYEEMMALTECQLEA-QNVTKGARHKIV--ISIQKLK-ERQNLLKSLERDIIEGG .:.:...:....::: .:. ...: ::..:. . ..: : ::. : : . .: KIAA05 VFKQLSMEKFLSLTEEDLNKFESLTMGAKKKLKTQLELEKEKSERRCLNPSAPPLVTSSG 280 290 300 310 320 330 190 200 210 220 230 240 KIAA10 SLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSPDCKDGAAATG :.: : . .. . :... . : ::. : . :.: . :. : KIAA05 VARVP-PTSHVGPVQSGRGSHAAELRVEVEQPHHQLPREGS-SSEYSSSSSSPMGVQARE 340 350 360 370 380 390 250 260 270 280 290 300 KIAA10 ATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLL-VSRPDEEN .. . . .. : : : : : : : ..:: .. .:.: :. : KIAA05 ESSDSAEENDRRVEIH-LESSDKEKPVMLL------NHFTSSSARPTAQVLPVQNEASSN 400 410 420 430 440 310 320 330 340 350 360 KIAA10 ISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYR----QQRNR :.. : . : : .. :.:. .:.: :. ::. : . ..::. KIAA05 PSGHHPLPPQML--SAASHITPIRMLN---SVHKPERGSADMKLLSSSVHSLLSLEERNK 450 460 470 480 490 500 370 380 390 400 410 420 KIAA10 GFGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTTATPTI : : .:. . : :..: KIAA05 GSGPRSSMKVDKSFGSAMMDVLPASAPHQPVQVLSGLSESSSMSPTVSFGPRTKVVHAST 510 520 530 540 550 560 508 residues in 1 query sequences 1986997 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:07:17 2008 done: Thu Dec 18 15:07:18 2008 Total Scan time: 0.460 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]