hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16035822/chunk_1/iprscan-20080501-16035822.nocrc
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Query sequence: KIAA1053
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00536.20.fs SAM domain (Sterile alpha motif)                59.3    7.8e-17   1
PF00536.20.ls SAM domain (Sterile alpha motif)                61.2      3e-15   1
PF07647.7.fs SAM domain (Sterile alpha motif)                47.7    2.4e-13   1
PF07647.7.ls SAM domain (Sterile alpha motif)                49.6    9.5e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07647.7.fs   1/1     110   173 ..     1    72 []    47.7  2.4e-13
PF07647.7.ls   1/1     110   173 ..     1    72 []    49.6  9.5e-12
PF00536.20.fs   1/1     111   171 ..     1    65 []    59.3  7.8e-17
PF00536.20.ls   1/1     111   171 ..     1    65 []    61.2    3e-15

Alignments of top-scoring domains:
PF07647.7.fs: domain 1 of 1, from 110 to 173: score 47.7, E = 2.4e-13
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                        ++++ +v +WL+s++l ++Y+  Fs+  ++    + + lte++L 
    KIAA1053   110    IGTSTSTNVPAWLKSLRL-HKYAALFSQMTYEE---M-MALTECQL- 150  

                   klalGitsvghRkkilkkiqelkqq<-*
                   + a ++  +g R+ki  +iq+lk++   
    KIAA1053   151 E-AQNV-TKGARHKIVISIQKLKER    173  

PF07647.7.ls: domain 1 of 1, from 110 to 173: score 49.6, E = 9.5e-12
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                        ++++ +v +WL+s++l ++Y+  Fs+  ++    + + lte++L 
    KIAA1053   110    IGTSTSTNVPAWLKSLRL-HKYAALFSQMTYEE---M-MALTECQL- 150  

                   klalGitsvghRkkilkkiqelkqq<-*
                   + a ++  +g R+ki  +iq+lk++   
    KIAA1053   151 E-AQNV-TKGARHKIVISIQKLKER    173  

PF00536.20.fs: domain 1 of 1, from 111 to 171: score 59.3, E = 7.8e-17
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      + ++   V+ WL+s++l++Y+  F     +++++++ lte  Le+ +
    KIAA1053   111    GTSTSTNVPAWLKSLRLHKYAALF---SQMTYEEMMALTECQLEAQN 154  

                   vtllGHrkKIlssIqgLk<-*
                   vt+ G r+KI+ sIq+Lk   
    KIAA1053   155 VTK-GARHKIVISIQKLK    171  

PF00536.20.ls: domain 1 of 1, from 111 to 171: score 61.2, E = 3e-15
                   *->dgwsfesVgeWLesiglgqYidnFlsagyidgdtllqlteeDLedlG
                      + ++   V+ WL+s++l++Y+  F     +++++++ lte  Le+ +
    KIAA1053   111    GTSTSTNVPAWLKSLRLHKYAALF---SQMTYEEMMALTECQLEAQN 154  

                   vtllGHrkKIlssIqgLk<-*
                   vt+ G r+KI+ sIq+Lk   
    KIAA1053   155 VTK-GARHKIVISIQKLK    171  

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