hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16053797/chunk_1/iprscan-20080501-16053797.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1054 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF07690.6.fs Major Facilitator Superfamily 50.5 4.9e-14 2 PF00083.14.fs Sugar (and other) transporter 26.8 1.7e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00083.14.fs 1/1 1 114 [. 119 226 .. 26.8 1.7e-07 PF07690.6.fs 2/2 330 447 .. 261 397 .] 42.5 8.3e-12 Alignments of top-scoring domains: PF00083.14.fs: domain 1 of 1, from 1 to 114: score 26.8, E = 1.7e-07 *->RvivGlgvGgisvlvPmYisEiAPkklRGalvslyQlaitfGilvAa R+++G+g+Gg++ +v Y +E+ ++RG s+ +++ +G++ A KIAA1054 1 RLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLCMFWMIGGIYAS 47 iiglglnktnnssn...nsdg.....WriplglqlvpalllligllflPE + ++++ ++ ++ ++ + + ++Wr+++ ++++p + ++l+f PE KIAA1054 48 AMAWAIIPHYG--WsfsMGSAyqfhsWRVFVIVCALPCVSSVVALTFMPE 95 SPRwLvekgkleeArevLa<-* SPR+L+e+gk++eA +L+ KIAA1054 96 SPRFLLEVGKHDEAWMILK 114 PF07690.6.fs: domain 2 of 2, from 330 to 447: score 42.5, E = 8.3e-12 *->lslsalaagllllalglggllgglllggrlsdrlgrglarkgeaeae +s++ ++ ++ +lg +++l g ++++ l+dr+g KIAA1054 330 YSAY--WIYFVN-FLGTLAVLPGNIVSALLMDRIG------------ 361 rrrllllgllllalgllllafapslliallllalvllGlgfggvfpalna r ++l +++l ++++++l+f++s + +++ l+l+ ++ +l KIAA1054 362 RLTMLGGSMVLSGISCFFLWFGTSES--MMIGMLCLYNGLTISAWNSLDV 409 lasdlappeaqerGtasGlyntagslggalgpllgGllld<-* ++++l+p + +r+t++G++n++ +++lg l++G l+ KIAA1054 410 VTVELYPTD--RRATGFGFLNALCKAAAVLGNLIFGSLVS 447 //