hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/TIGRFAMs_HMM.LIB.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16053797/chunk_1/iprscan-20080501-16053797.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1054 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TIGR01299 synapt_SV2: synaptic vesicle protein SV2 729.4 7.9e-217 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TIGR01299 1/1 1 480 [] 1 742 [] 729.4 7.9e-217 Alignments of top-scoring domains: TIGR01299: domain 1 of 1, from 1 to 480: score 729.4, E = 7.9e-217 *->ledgfkdraallkGakdiakevkkhaakkvnkgldraqdeytrrsys KIAA1054 - ----------------------------------------------- - rfededddddfppPgdgyyrGegnddeeeGggssdateGhdeddeiyeGe KIAA1054 - -------------------------------------------------- - yqGiPraengGkgervadGaPlgGvrgglkdgeGPPGGegeaerrkdeee KIAA1054 - -------------------------------------------------- - laqqyelilrecGhGrfqWalffvlGlalladGvevfvvGfvlPsaekdl KIAA1054 - -------------------------------------------------- - clpdsgkGwlGlivylGllvGaflWGGladklGrkqclliclsvngffaf KIAA1054 - -------------------------------------------------- - lssfvqGyGffllcrllsGfGiGGaiPtvfsyfaeflarekrGehlsWlc rllsGfGiGGaiPtvfsyfae+larekrGehlsWlc KIAA1054 1 --------------RLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLSWLC 36 lfWliGGvyaaalaWaiiPhyGWsfslGsayqfhsWrvfvlvcalPcvfa +fW+iGG+ya+a+aWaiiPhyGWsfs+GsayqfhsWrvfv+vcalPcv++ KIAA1054 37 MFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSS 86 vgaltfqPesPrfllenGkhdeaWlvlklvhdtnlrakGhPekvftvnhi v+altf+PesPrflle+GkhdeaW++lkl+hdtn+ra+G+Pekvftvn+i KIAA1054 87 VVALTFMPESPRFLLEVGKHDEAWMILKLIHDTNMRARGQPEKVFTVNKI 136 ktphqedelieiesdtGtWyrrwgvraltlgggvWgnflrcfnppyrent ktp+q+delieiesdtGtWyrr++vr++t+++g+W++f+rcfn+p+r+nt KIAA1054 137 KTPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLTFMRCFNYPVRDNT 186 lkltgvWftlsfgyyGltvWfPdvikhlqaddyalltknfpgdkyenftf +klt+vWftlsfgyyGl+vWfPdvik lq+d+yallt+n+++dky+nft+ KIAA1054 187 IKLTIVWFTLSFGYYGLSVWFPDVIKPLQSDEYALLTRNVERDKYANFTI 236 nftlenqvhtGgeydngkflGlklksvtfedslfeecyfddvtssntffk nft+enq+htG+eydng+f+G+k+ksvtf+ds+f++c+f+dvts+nt+fk KIAA1054 237 NFTMENQIHTGMEYDNGRFIGVKFKSVTFKDSVFKSCTFEDVTSVNTYFK 286 nctfidtlfyntdlfpykfvdselvnctflhnkeGcpldfdGdgygaywv nctfidt+f+ntd++pykf+dse+ nc+f hnk+Gc+++fd d+y+ayw+ KIAA1054 287 NCTFIDTVFDNTDFEPYKFIDSEFKNCSFFHNKTGCQITFD-DDYSAYWI 335 yfvnflGtlavlPGnivsallldkiGrltllgGssvlsgvscfflwfGns yfvnflGtlavlPGnivsall+d+iGrlt+lgGs+vlsg+scfflwfG+s KIAA1054 336 YFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFGTS 385 esaligllclfgGltiaaWnaldvltvelyPtdkratgfGflnalcklaa es++ig+lcl++Glti+aWn+ldv+tvelyPtd+ratgfGflnalck+aa KIAA1054 386 ESMMIGMLCLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLNALCKAAA 435 vlGnlifgslvgitkaaPillasaalalGgllglklPdtrgqvlq<-* vlGnlifgslv+itk++Pillas++l++Ggl+gl lPdtr+qvl+ KIAA1054 436 VLGNLIFGSLVSITKSIPILLASTVLVCGGLVGLCLPDTRTQVLM 480 //