hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16090455/chunk_1/iprscan-20080501-16090455.nocrc
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Query sequence: KIAA1056
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          86.7    6.8e-23   6
PF00096.16.fs Zinc finger, C2H2 type                          74.9    2.4e-19   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.ls   2/6     461   484 ..     1    24 []    20.5   0.0054
PF00096.16.fs   3/6     516   540 ..     1    24 []    24.6  6.9e-05
PF00096.16.ls   3/6     516   540 ..     1    24 []    26.6  8.2e-05

Alignments of top-scoring domains:
PF00096.16.ls: domain 2 of 6, from 461 to 484: score 20.5, E = 0.0054
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kCp +C+  ++ + +L  H++ +H   
    KIAA1056   461    LKCP-KCNWHYKYQQTLDVHMQEkH    484  

PF00096.16.fs: domain 3 of 6, from 516 to 540: score 24.6, E = 6.9e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+C+ +C++s ++k+nL  H+++++H   
    KIAA1056   516    YRCD-VCNYSTTTKGNLSIHMQSdkH    540  

PF00096.16.ls: domain 3 of 6, from 516 to 540: score 26.6, E = 8.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrt..H<-*
                      y+C+ +C++s ++k+nL  H+++++H   
    KIAA1056   516    YRCD-VCNYSTTTKGNLSIHMQSdkH    540  

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