hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16172909/chunk_1/iprscan-20080501-16172909.nocrc
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Query sequence: KIAA1061
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07679.6.fs Immunoglobulin I-set domain                     66.8      7e-19   2
PF00047.15.fs Immunoglobulin domain                           71.2      9e-19   3
PF00047.15.ls Immunoglobulin domain                           71.0    3.5e-18   2
PF07679.6.ls Immunoglobulin I-set domain                     66.0    1.1e-16   1
PF07686.7.fs Immunoglobulin V-set domain                     23.5    3.7e-06   2
PF07686.7.ls Immunoglobulin V-set domain                     22.9    0.00024   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07686.7.ls   1/2      92   189 ..     1   141 []    13.4   0.0022
PF00047.15.ls   1/2     114   174 ..     1    65 []    30.2  6.7e-06
PF00047.15.fs   1/3     114   174 ..     1    65 []    28.3  5.1e-07
PF07679.6.fs   2/2     192   281 ..     1    96 []    64.1  4.4e-18
PF07679.6.ls   1/1     192   281 ..     1    96 []    66.0  1.1e-16
PF00047.15.ls   2/2     206   266 ..     1    65 []    40.8  4.3e-09
PF00047.15.fs   2/3     206   266 ..     1    65 []    38.9  6.3e-10

Alignments of top-scoring domains:
PF07686.7.ls: domain 1 of 2, from 92 to 189: score 13.4, E = 0.0022
                   *->qsqvtqepprWGLLLASLfWpt.....svtvaeGgsvtLpCtysGtf
                      ++qv q++ +           ++++ ++ tv +G s  L+C ++   
    KIAA1061    92    AFQVVQLSLA-----------PedrvsVTTVTVGLSTVLTCAVH--- 124  

                   ddsssssgtfsiyWyrq.qppgkgpeliiisyysyystsegngtvgerfk
                   +d     ++  i W r++ ++         +++   + +         f 
    KIAA1061   125 GDL----RP-PIIWKRNgLTL---------NFLDLEDIN--------DFG 152  

                   grvtlsgnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl
                   +  +           L I++++  + G Y+C+ s+  + +  +  +L+V 
    KIAA1061   153 EDDS-----------LYITKVTTIHMGNYTCHASG--HEQLFQTHVLQVN 189  

                   <-*
                      
    KIAA1061     -     -    

PF00047.15.ls: domain 1 of 2, from 114 to 174: score 30.2, E = 6.7e-06
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty
                      G s  LtC v  +g+  + + W+rng +l   +l +  +  ++ds  
    KIAA1061   114    GLSTVLTCAV--HGDLRPPIIWKRNGLtLNfLDLEDiNDFGEDDS-- 156  

                   qtsLtitnvtpeDggtYtCvv<-*
                      L it+vt  + g+YtC++   
    KIAA1061   157 ---LYITKVTTIHMGNYTCHA    174  

PF00047.15.fs: domain 1 of 3, from 114 to 174: score 28.3, E = 5.1e-07
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty
                      G s  LtC v  +g+  + + W+rng +l   +l +  +  ++ds  
    KIAA1061   114    GLSTVLTCAV--HGDLRPPIIWKRNGLtLNfLDLEDiNDFGEDDS-- 156  

                   qtsLtitnvtpeDggtYtCvv<-*
                      L it+vt  + g+YtC++   
    KIAA1061   157 ---LYITKVTTIHMGNYTCHA    174  

PF07679.6.fs: domain 2 of 2, from 192 to 281: score 64.1, E = 4.4e-18
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp
                      P++   p+++    G +a++ C+++G P P ++W+K+G ++s     
    KIAA1061   192    PVIRVYPESQAQEPGVAASLRCHAEGIPMPRITWLKNGVDVST--QM 236  

                   sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<
                   s+ ++  ++g    + L Is v  +D G YtC+A+N++G +e   +L + 
    KIAA1061   237 SKQLSLLANG----SELHISSVRYEDTGAYTCIAKNEVGVDEDISSLFI  281  

                   -*
                     
    KIAA1061     -    -    

PF07679.6.ls: domain 1 of 1, from 192 to 281: score 66.0, E = 1.1e-16
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp
                      P++   p+++    G +a++ C+++G P P ++W+K+G ++s     
    KIAA1061   192    PVIRVYPESQAQEPGVAASLRCHAEGIPMPRITWLKNGVDVST--QM 236  

                   sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV<
                   s+ ++  ++g    + L Is v  +D G YtC+A+N++G +e   +L + 
    KIAA1061   237 SKQLSLLANG----SELHISSVRYEDTGAYTCIAKNEVGVDEDISSLFI  281  

                   -*
                     
    KIAA1061     -    -    

PF00047.15.ls: domain 2 of 2, from 206 to 266: score 40.8, E = 4.3e-09
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty
                      G  ++L+C++  +g p++++tWl+ng ++ + ++   s   ng+   
    KIAA1061   206    GVAASLRCHA--EGIPMPRITWLKNGVdVStQMSKQlSLLANGSE-- 248  

                   qtsLtitnvtpeDggtYtCvv<-*
                      L+i++v++eD+g YtC +   
    KIAA1061   249 ---LHISSVRYEDTGAYTCIA    266  

PF00047.15.fs: domain 2 of 3, from 206 to 266: score 38.9, E = 6.3e-10
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvt.ssenngdsty
                      G  ++L+C++  +g p++++tWl+ng ++ + ++   s   ng+   
    KIAA1061   206    GVAASLRCHA--EGIPMPRITWLKNGVdVStQMSKQlSLLANGSE-- 248  

                   qtsLtitnvtpeDggtYtCvv<-*
                      L+i++v++eD+g YtC +   
    KIAA1061   249 ---LHISSVRYEDTGAYTCIA    266  

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