hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16172909/chunk_1/iprscan-20080501-16172909.nocrc
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Query sequence: KIAA1061
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00408                                                  97.3    1.8e-24   2
SM00409                                                  78.9    6.4e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00409    1/2     106   189 ..     1    58 []    36.4  3.8e-06
SM00408    1/2     112   179 ..     1    56 []    31.5  0.00012
SM00409    2/2     198   282 ..     1    58 []    42.4  5.9e-08
SM00408    2/2     204   271 ..     1    56 []    65.8  5.6e-15

Alignments of top-scoring domains:
SM00409: domain 1 of 2, from 106 to 189: score 36.4, E = 3.8e-06
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                       + +tv +G s +LtC ++++  + i W++++ + +  +  + ++ +
    KIAA1061   106    VSvTTVTVGLSTVLTCaVHgdlrpPIIWKrngltlnfldledindfg 152  

                   ....LtI.nvtpeDsesgGtYtCaat.sgsasseqgttLtVl<-*
                    +++L I++vt  +    G+YtC a+++ + ++  +  L+V    
    KIAA1061   153 eddsLYItKVTTIHM---GNYTCHASgHEQLFQ--THVLQVN    189  

SM00408: domain 1 of 2, from 112 to 179: score 31.5, E = 0.00012
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                        G s +LtC + gd  p I W+++g  l+  + ++ ++ + + +L 
    KIAA1061   112    TVGLSTVLTCAVHGDLRPPIIWKRnGLTLNfldledindfgEDDSLY 158  

                   iknvsleDsGlYtCvArNsvg<-*
                   i+ v+  + G+YtC A+++     
    KIAA1061   159 ITKVTTIHMGNYTCHASGHEQ    179  

SM00409: domain 2 of 2, from 198 to 282: score 42.4, E = 5.9e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                      p+++   +G  ++L+C+a++ + ++itW++++ + +++ +++ +   
    KIAA1061   198    PEsQAQEPGVAASLRChAEgipmpRITWLkngvdvstqmskqlslla 244  

                   ....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   +++ L+I++v++eD+   G YtC a++  g+++      L ++   
    KIAA1061   245 ngseLHIsSVRYEDT---GAYTCIAKneVGVDED--ISSLFIE    282  

SM00408: domain 2 of 2, from 204 to 271: score 65.8, E = 5.6e-15
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt
                      ++G +++L+C+a+g p p ItWlk+g  ++++ +++ +   +gs+L+
    KIAA1061   204    EPGVAASLRCHAEGIPMPRITWLKnGVDVStqmskqlsllaNGSELH 250  

                   iknvsleDsGlYtCvArNsvg<-*
                   i++v++eD G YtC+A N+vg   
    KIAA1061   251 ISSVRYEDTGAYTCIAKNEVG    271  

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