hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16305349/chunk_1/iprscan-20080501-16305349.nocrc
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Query sequence: KIAA1069
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00148                                                 258.9    4.2e-73   1
SM00149                                                 181.0    1.1e-49   1
SM00239                                                  88.2      1e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00148    1/1      84   229 ..     1   182 []   258.9  4.2e-73
SM00149    1/1     386   499 ..     1   119 []   181.0  1.1e-49
SM00239    1/1     518   626 ..     1    92 []    88.2    1e-21

Alignments of top-scoring domains:
SM00148: domain 1 of 1, from 84 to 229: score 258.9, E = 4.2e-73
                   *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR
                      qDmd+PL  Y+I sSHN                              
    KIAA1069    84    QDMDQPLCNYYIASSHN------------------------------ 100  

                   FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft
                    TYLtg+Ql + s v +Y ++L+ GcRcvE DcwdgpdgePv++HG+T+t
    KIAA1069   101 -TYLTGDQLLSQSKVDMYARVLQEGCRCVEVDCWDGPDGEPVVHHGYTLT 149  

                   skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF
                   ski ++dV+e+I+k+AFv+ ++P  vIlS+enHcs +qQ+k+aq++k iF
    KIAA1069   150 SKILFRDVVETINKHAFVKNEFP--VILSIENHCSIQQQRKIAQYLKGIF 197  

                   gdlLytkPltsseeypgsnLPsPeqLkgKILLkgK<-*
                   gd+L   +l s++++    LPsP++LkgKIL+kgK   
    KIAA1069   198 GDKL---DLSSVDTGECKQLPSPQSLKGKILVKGK    229  

SM00149: domain 1 of 1, from 386 to 499: score 181.0, E = 1.1e-49
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      ls+Lv+y  +v  + ++++  +     +++SfsEt  a + ++++ +
    KIAA1069   386    LSDLVVYTNSVAAQDIVDDGTT----GNVLSFSETR-AHQVVQQKSE 427  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   +f  yNq+qL+R+YP++ R+DSSN+nP+++WnaGcQ+VALN+Q  +++Mq
    KIAA1069   428 QFMIYNQKQLTRIYPSAYRIDSSNFNPLPYWNAGCQLVALNYQSEGRMMQ 477  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   lN ++F aNG+CGYVLKP  +    
    KIAA1069   478 LNRAKFKANGNCGYVLKPQQMC    499  

SM00239: domain 1 of 1, from 518 to 626: score 88.2, E = 1e-21
                   *->tLtvkiisArnLp..............DPYVkvs...........kT
                      +L +k+is+++Lp+++++  ++++   DP+V+v+  + + +  +++T
    KIAA1069   518    QLILKVISGQQLPkppdsmfgdrgeiiDPFVEVEiiglpvdcckdQT 564  

                   kvvkktlsgfNPvWnEesetFeFevpp...s.LeieVyDk.....dfiGr
                   +vv +++  fNPvW+E   t++F+v+ ++ + +++ V+D+++ ++df+G+
    KIAA1069   565 RVVDDNG--FNPVWEE---TLTFTVHMpeiAlVRFLVWDHdpigrDFVGQ 609  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                    t+               +s+l +g+rh  l   
    KIAA1069   610 RTVT--------------FSSLVpGYRHvYL    626  

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