hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16373223/chunk_1/iprscan-20080501-16373223.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1073 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF06602.5.ls Myotubularin-related 272.3 8.8e-79 1 PF06602.5.fs Myotubularin-related 270.3 3.4e-78 1 PF02893.10.fs GRAM domain 61.7 1.6e-16 1 PF02893.10.ls GRAM domain 61.2 3.2e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02893.10.ls 1/1 100 171 .. 1 82 [] 61.2 3.2e-15 PF02893.10.fs 1/1 107 171 .. 9 82 .] 61.7 1.6e-16 PF06602.5.fs 1/1 266 383 .. 1 123 [] 270.3 3.4e-78 PF06602.5.ls 1/1 266 383 .. 1 123 [] 272.3 8.8e-79 Alignments of top-scoring domains: PF02893.10.ls: domain 1 of 1, from 100 to 171: score 61.2, E = 3.2e-15 *->ekfrkiFkeilppeEkLiadckaeV.ysCplqrpfskipvqGrlYlt k+ ++ ++l+p+E++ ++ +++V+y+Cp+ ++ v G+l++t KIAA1073 100 NKLAEMEEPPLLPGENIKDM-AKDVtYICPFTGA-----VRGTLTVT 140 nnrlcFrSdklgdltkegvyklviPladiervekes<-* n+rl+F+S+ ++++ +l++ l++i rvek++ KIAA1073 141 NYRLYFKSMERDPPF-----VLDASLGVINRVEKIG 171 PF02893.10.fs: domain 1 of 1, from 107 to 171: score 61.7, E = 1.6e-16 *->e.ilppeEkLiadckaeV.ysCplqrpfskipvqGrlYltnnrlcFr e++l+p+E++ ++ +++V+y+Cp+ ++ v G+l++tn+rl+F+ KIAA1073 107 EpPLLPGENIKDM-AKDVtYICPFTGA-----VRGTLTVTNYRLYFK 147 SdklgdltkegvyklviPladiervekes<-* S+ ++++ +l++ l++i rvek++ KIAA1073 148 SMERDPPF-----VLDASLGVINRVEKIG 171 PF06602.5.fs: domain 1 of 1, from 266 to 383: score 270.3, E = 3.4e-78 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv YelC++YPa+LvVP+ i D+eLk+vA+FRsrgR+PVLsw+H+e++A+ KIAA1073 266 YELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQAT 312 IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt I+RcSQP+vG+sgkR+keDEk+l+ai+++na qs+k++I+DaRp++ KIAA1073 313 ITRCSQPMVGVSGKRSKEDEKYLQAIMDSNA-----QSHKIFIFDARPSV 357 nAlaNrAkGGGyEneenYpnaelvfl<-* nA+aN+AkGGGyE+e++Y+naelvfl KIAA1073 358 NAVANKAKGGGYESEDAYQNAELVFL 383 PF06602.5.ls: domain 1 of 1, from 266 to 383: score 272.3, E = 8.8e-79 *->YelCpsYPakLvVPksisDdeLkkvAkFRsrgRlPVLswrHqengAv YelC++YPa+LvVP+ i D+eLk+vA+FRsrgR+PVLsw+H+e++A+ KIAA1073 266 YELCDTYPALLVVPANIPDEELKRVASFRSRGRIPVLSWIHPESQAT 312 IvRcSQPLvGfsgkRckeDEkllkailkanaiDekiqskklyIvDaRprt I+RcSQP+vG+sgkR+keDEk+l+ai+++na qs+k++I+DaRp++ KIAA1073 313 ITRCSQPMVGVSGKRSKEDEKYLQAIMDSNA-----QSHKIFIFDARPSV 357 nAlaNrAkGGGyEneenYpnaelvfl<-* nA+aN+AkGGGyE+e++Y+naelvfl KIAA1073 358 NAVANKAKGGGYESEDAYQNAELVFL 383 //