hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16373223/chunk_1/iprscan-20080501-16373223.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1073
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00568                                                  58.4      9e-13   1
SM00404                                                  37.0    2.5e-06   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00568     1/1     103   171 ..     1    80 []    58.4    9e-13
SM00404     1/1     397   545 ..     1    92 []    37.0  2.5e-06

Alignments of top-scoring domains:
SM00568: domain 1 of 1, from 103 to 171: score 58.4, E = 9e-13
                   *->ekFrklFkLpeeEkLiadcekeVtysCyLsttgdipvqGrlyiSnnr
                       ++ ++ +L+++E+++++ +k+Vty C++ +     v G+l ++n+r
    KIAA1073   103    AEM-EEPPLLPGENIKDM-AKDVTYICPFTG----AVRGTLTVTNYR 143  

                   lcFrSnlfgkltppqyykvviPLadItrieKst<-*
                   l+F+S +++++ +    +++  L++I r+eK++   
    KIAA1073   144 LYFKS-MERDPPF----VLDASLGVINRVEKIG    171  

SM00404: domain 1 of 1, from 397 to 545: score 37.0, E = 2.5e-06
                   *->tvkhyhytgWpDhvekdsgvPe.dsileflravrk............
                      ++k   y++  +      +  ++    ++l++++    +  +  ++ 
    KIAA1073   397    KLKEIVYPNIEET-----HWLSnLESTHWLEHIKLilagalriadkv 438  

                   .....PivVHCSAGvGRTGtfvaidillqq....................
                   +++++++vVHCS+G++RT+++ ++ +l+ ++  ++ ++ +   +++  + 
    KIAA1073   439 esgktSVVVHCSDGWDRTAQLTSLAMLMLDgyyrtirgfevlvekewlsf 488  

                   ........................vdifdtvkelRsqRpgmvqteeQYlF
                   +++ + + +++++++ + ++++  + + d+v+++  q p +++ +e +l 
    KIAA1073   489 ghrfqlrvghgdknhadadrspvfLQFIDCVWQMTRQFPTAFEFNEYFLI 538  

                   lyralle<-*
                    +  +l+   
    KIAA1073   539 TILDHLY    545  

//