# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj07082.fasta.huge -Q ../query/KIAA1080.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1080, 517 aa vs ./tmplib.24314 library 1986988 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.5913+/-0.00692; mu= 3.3246+/- 0.470 mean_var=189.1749+/-44.271, 0's: 0 Z-trim: 4 B-trim: 16 in 1/39 Lambda= 0.093249 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0154 ( 692 res) ha03131 ( 692) 767 115.3 1.4e-26 >>KIAA0154 ( 692 res) ha03131 (692 aa) initn: 1225 init1: 664 opt: 767 Z-score: 569.1 bits: 115.3 E(): 1.4e-26 Smith-Waterman score: 1108; 37.147% identity (59.404% similar) in 638 aa overlap (13-515:63-690) 10 20 30 40 KIAA10 FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW : ...:. :::. .. ::: .:::.:.:: KIAA01 GFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALT--YLGDRVSEKVKTKVIELLYSW 40 50 60 70 80 90 50 60 70 80 90 100 KIAA10 TVWFPEDIKIRDAYQMLKKQGIIKQDPKLPVDKIL-PPPSPWPKSSIFDADEEKSKLLTR :. .::. ::.:::.:::.:::...:: .:::. : : : : ::. .:: ::::::::.. KIAA01 TMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFD-DEEKSKLLAK 100 110 120 130 140 110 120 130 140 150 160 KIAA10 LLKSNHPEDLQAANRLIKNLVKEEQEKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQ ::::..:.::: ::.:::..:::.. . .::.::. ..::: ..:..:.::: : . . KIAA01 LLKSKNPDDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDS 150 160 170 180 190 200 170 180 190 200 210 220 KIAA10 APPDQEALQVVYERCEKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVLLYKQVMEGR . :.: .. ....::. : :::.:::.: :.:..:..::::.: :.. . :: ..::. KIAA01 SDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQ 210 220 230 240 250 260 230 240 250 KIAA10 VTFGNRVTSSLGDIPVSRVFQNPAGCMKTCPLIDL-EVD--------------------- : :. .: .: : .. . : . :::: :.: KIAA01 VINGEVATLTLPDS------EGNSQCSNQGTLIDLAELDTTNSLSSVLAPAPTPPSSGIP 270 280 290 300 310 320 260 270 280 290 KIAA10 --------NGPAQM-------GTVVPS-------LLHQDLAALGISD-AP-VTGMVS--- .:: . .:. :: : ..: ::..: :: : : KIAA01 ILPPPPQASGPPRSRSSSQAEATLGPSSTSNALSWLDEELLCLGLADPAPNVPPKESAGN 330 340 350 360 370 380 300 310 KIAA10 --------------------GQNCCE-------EKRNPSSST----LPG--------GGV : : . ::::. :: ..: KIAA01 SQWHLLQREQSDLDFFSPRPGTAACGASDAPLLQPSAPSSSSSQAPLPPPFPAPVVPASV 390 400 410 420 430 440 320 330 340 KIAA10 QNPSADRNLLDLLSAQPAPCP---------------------LNYVSQ------------ ::: .:.. .. :: : :. ..: KIAA01 PAPSAGSSLFST-GVAPALAPKVEPAVPGHHGLALGNSALHHLDALDQLLEEAKVTSGLV 450 460 470 480 490 500 350 360 370 380 KIAA10 -KSVPKEVPPGTKSSPGWSWEAGPLAP-----SPSSQNTP-------LAQVFVPLESVKP .. .: : . : . .:: .: : .::..: ::.. :::::.:: KIAA01 KPTTSPLIPTTTPARPLLPFSTGPGSPLFQPLSFQSQGSPPKGPELSLASIHVPLESIKP 510 520 530 540 550 560 390 400 410 420 430 440 KIAA10 SSLPPLIVYDRNGFRILLHFSQTGAPGHPEVQVLLLTMMSTAPQPVWDIMFQVAVPKSMR :: :. .::.::::::.::.. ::.:.: :....:..::: :: .:..:.::::::. KIAA01 SSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNTAPLPVKSIVLQAAVPKSMK 570 580 590 600 610 620 450 460 470 480 490 500 KIAA10 VKLQPASSSKLPAFSPLMPPAVISQMLLLDNPHKEPIRLRYKLTFNQGGQPFSEVGEVKD ::::: :...: :::..:::.:.:..:: :: :: .:::::::: : : .::::: . KIAA01 VKLQPPSGTELSPFSPIQPPAAITQVMLLANPLKEKVRLRYKLTFALGEQLSTEVGEVDQ 630 640 650 660 670 680 510 KIAA10 FPDLAVLGAA :: . : KIAA01 FPPVEQWGNL 690 517 residues in 1 query sequences 1986988 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:21 2008 done: Thu Dec 18 15:08:22 2008 Total Scan time: 0.460 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]