hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16491804/chunk_1/iprscan-20080501-16491804.nocrc
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Query sequence: KIAA1080
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF02883.10.fs   Adaptin C-terminal domain               186.9      3e-56   1
PF03127.5.ls    GAT domain                              190.3    4.4e-54   1
PF02883.10.ls   Adaptin C-terminal domain               188.9    1.1e-53   1
PF03127.5.fs    GAT domain                              188.3    1.4e-53   1
PF00790.9.fs    VHS domain                               91.8    7.9e-25   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00790.9.fs      1/1       1    63 [.    84   153 .]    91.8  7.9e-25
PF03127.5.fs      1/1     127   228 ..     1   106 []   188.3  1.4e-53
PF03127.5.ls      1/1     127   228 ..     1   106 []   190.3  4.4e-54
PF02883.10.fs     1/1     385   509 ..     1   125 []   186.9    3e-56
PF02883.10.ls     1/1     385   509 ..     1   125 []   188.9  1.1e-53

Alignments of top-scoring domains:
PF00790.9.fs: domain 1 of 1, from 1 to 63: score 91.8, E = 7.9e-25
                   *->FHleiaskeFlneLvkliprkppgrpakdkVkkkileliqeWadafC
                      FH e+a+++FlneL+k++++k++g +a++kVk +++e++++W+++f 
    KIAA1080     1    FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF- 46   

                   KhdknkpdlkyisdvyklLKrkG<-*
                         p+  +i+d+y++LK++G   
    KIAA1080    47 ------PEDIKIRDAYQMLKKQG    63   

PF03127.5.fs: domain 1 of 1, from 127 to 228: score 188.3, E = 1.4e-53
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +++Ek+sK++s++EeVr++V++L+eMLs+y++++++p+d+E+Lq++y
    KIAA1080   127    EKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVY 173  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   erC+k++p++f+L+sdt+D+D   ++laeiLqaND L++++l+Yk++++g
    KIAA1080   174 ERCEKLRPTLFRLASDTTDDD---DALAEILQANDLLTQGVLLYKQVMEG 220  

                   rtrvlgaaa<-*
                   r+ ++g+++   
    KIAA1080   221 RV-TFGNRV    228  

PF03127.5.ls: domain 1 of 1, from 127 to 228: score 190.3, E = 4.4e-54
                   *->lrpEkisKllselEeVrnnVrlLseMLsaydPgdaepddsElLqeLy
                      +++Ek+sK++s++EeVr++V++L+eMLs+y++++++p+d+E+Lq++y
    KIAA1080   127    EKSEKVSKRVSAVEEVRSHVKVLQEMLSMYRRPGQAPPDQEALQVVY 173  

                   erCrkmqprifqLlsdteDnDSDAellaeiLqaNDnLnnvilrYkrivrg
                   erC+k++p++f+L+sdt+D+D   ++laeiLqaND L++++l+Yk++++g
    KIAA1080   174 ERCEKLRPTLFRLASDTTDDD---DALAEILQANDLLTQGVLLYKQVMEG 220  

                   rtrvlgaaa<-*
                   r+ ++g+++   
    KIAA1080   221 RV-TFGNRV    228  

PF02883.10.fs: domain 1 of 1, from 385 to 509: score 186.9, E = 3e-56
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp++lp+++vy+++g++I l+f+++g p++p++ ++ lt++++++q
    KIAA1080   385    VKPSSLPPLIVYDRNGFRILLHFSQTGaPGHPEVQVLLLTMMSTAPQ 431  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+++++fq+AVPKs++++Lqp+s+s lpa++p+++P +i+Q+l + np+ 
    KIAA1080   432 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPaVISQMLLLDNPH- 480  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+p+rlr+klt+n+ggq++ e+gev  +P   
    KIAA1080   481 -KEPIRLRYKLTFNQGGQPFSEVGEVKDFP    509  

PF02883.10.ls: domain 1 of 1, from 385 to 509: score 188.9, E = 1.1e-53
                   *->pkpawlpsivvyessgLqIgltferrg.pespglgritltftNkssq
                      +kp++lp+++vy+++g++I l+f+++g p++p++ ++ lt++++++q
    KIAA1080   385    VKPSSLPPLIVYDRNGFRILLHFSQTGaPGHPEVQVLLLTMMSTAPQ 431  

                   pitnfvfqaAVPKslkLqLqpqsgsvlpaggpgaqP.aitQvlrvsnpqd
                   p+++++fq+AVPKs++++Lqp+s+s lpa++p+++P +i+Q+l + np+ 
    KIAA1080   432 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPaVISQMLLLDNPH- 480  

                   nkkplrlrikltYnlggqsvqeqgevsklP<-*
                    k+p+rlr+klt+n+ggq++ e+gev  +P   
    KIAA1080   481 -KEPIRLRYKLTFNQGGQPFSEVGEVKDFP    509  

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