hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16491804/chunk_1/iprscan-20080501-16491804.nocrc
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Query sequence: KIAA1080
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
SM00809                                                 153.8    1.8e-41   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
SM00809           1/1     385   509 ..     1   124 []   153.8  1.8e-41

Alignments of top-scoring domains:
SM00809: domain 1 of 1, from 385 to 509: score 153.8, E = 1.8e-41
                   *->pklssappivayeknglqIgfkfek.rrpgepdviritltftNksss
                       k+ss pp+++y+ ng++I ++f+++  pg+p+v ++ lt+ +++++
    KIAA1080   385    VKPSSLPPLIVYDRNGFRILLHFSQtGAPGHPEVQVLLLTMMSTAPQ 431  

                   pitnFsfqaAVPKsqkLqLqppssntlppggqggpPA.itQvlkvenpgk
                   p+ +++fq+AVPKs++++Lqp+ss+ lp++++  pPA i Q+l+++np+k
    KIAA1080   432 PVWDIMFQVAVPKSMRVKLQPASSSKLPAFSPLMPPAvISQMLLLDNPHK 481  

                   gkplrlrlrlsYtvggqsvqeqgdvlkfP<-*
                    +p+rlr++l+++ ggq+++e+g+v +fP   
    KIAA1080   482 -EPIRLRYKLTFNQGGQPFSEVGEVKDFP    509  

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