hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-16523825/chunk_1/iprscan-20080501-16523825.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1082 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02373.13.fs JmjC domain 68.5 8.5e-20 1 PF02373.13.ls JmjC domain 64.3 3.7e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02373.13.ls 1/1 1619 1730 .. 1 126 [] 64.3 3.7e-16 PF02373.13.fs 1/1 1627 1730 .. 11 126 .] 68.5 8.5e-20 Alignments of top-scoring domains: PF02373.13.ls: domain 1 of 1, from 1619 to 1730: score 64.3, E = 3.7e-16 *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek + + +H +++ + + ++++ a++ ++ + ++ e KIAA1082 1619 --GDADEVTKQRIHDGKEKPG-ALWHIYAAKDAEKIRELLRKVGEE- 1661 lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ +++ ++ +++p++d+ ++ ++ +k+l +e g++ + +vQ KIAA1082 1662 -QGQENPP--------DHDPIHDQSWYLDQTLRKRL-YEEYGVQGWAIVQ 1701 kpGEfVitfPgayHavfNlGfniaeavNF<-* + G++V++++ga+H+v+Nl+++i++a +F KIAA1082 1702 FLGDAVFIPAGAPHQVHNLYSCIKVAEDF 1730 PF02373.13.fs: domain 1 of 1, from 1627 to 1730: score 68.5, E = 8.5e-20 *->tpwHiEdqglySinylhfgapkvWYgiPseyaekfeklakvlskhfs + +H +++ + + ++++ a++ ++ + ++ e +++ ++ KIAA1082 1627 QRIHDGKEKPG-ALWHIYAAKDAEKIRELLRKVGEE--QGQENPP-- 1668 aPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQkpGEfVitfP +++p++d+ ++ ++ +k+l +e g++ + +vQ+ G++V++++ KIAA1082 1669 ------DHDPIHDQSWYLDQTLRKRL-YEEYGVQGWAIVQFLGDAVFIPA 1711 gayHavfNlGfniaeavNF<-* ga+H+v+Nl+++i++a +F KIAA1082 1712 GAPHQVHNLYSCIKVAEDF 1730 //