hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-16523825/chunk_1/iprscan-20080501-16523825.nocrc
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Query sequence: KIAA1082
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 232.4    3.8e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00558    1/1    1524  1747 ..     1   214 []   232.4  3.8e-65

Alignments of top-scoring domains:
SM00558: domain 1 of 1, from 1524 to 1747: score 232.4, E = 3.8e-65
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++++++++ +lP++eyt+++   g+lnl+s lp     ++++ pd+
    KIAA1082  1524    MPTRFEDLMENLPLPEYTKRD---GRLNLASRLP-----SYFVRPDL 1562 

                   gkPkpkpylymGma.E.sr.gstTpwHiDdydlySvNylhqgage.....
                   g   pk+y ++G  ++++r+ +tT++H+D++d  +vN++++++ + +++ 
    KIAA1082  1563 G---PKMYNAYGLItAeDRrVGTTNLHLDVSD--AVNVMVYVGIPigega 1607 

                   ...........................d.GKrWyliPpedaeklekllkk
                   ++++  ++ ++++ ++ ++++ +++++++G++W++ + +daek+++ll+k
    KIAA1082  1608 hdeevlktidegdadevtkqrihdgkeKpGALWHIYAAKDAEKIRELLRK 1657 

                   hgkef.hi.stapdlfkeqpdllihlstwispevlkkrlkeeperPlfqg
                    g+e++++++        +++++ih+++w++++ l+krl+ee+      g
    KIAA1082  1658 VGEEQgQEnP--------PDHDPIHDQSWYLDQTLRKRLYEEY------G 1693 

                   vpvyrfvQkpGefvfiPpGwyHaVfnlGkfniavavNFaspewlpmglrl
                   v+ + +vQ +G++vfiP+G++H+V nl +++i+va +F+spe++ +++rl
    KIAA1082  1694 VQGWAIVQFLGDAVFIPAGAPHQVHNL-YSCIKVAEDFVSPEHVKHCFRL 1742 

                   veelr<-*
                   ++e+r   
    KIAA1082  1743 TQEFR    1747 

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