hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17025315/chunk_1/iprscan-20080501-17025315.nocrc
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Query sequence: KIAA1088
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00604 rad3: DNA repair helicase (rad3)               363.4   1.2e-106   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00604   1/1       8   745 ..     1   813 []   363.4 1.2e-106

Alignments of top-scoring domains:
TIGR00604: domain 1 of 1, from 8 to 745: score 363.4, E = 1.2e-106
                   *->ellvyfpyekiyninAEpeqrsymrdlkrsLDrgdeailsaEyDEmP
                      + +v fp+ + y      +q +ym  + + L  + + il     E+P
    KIAA1088     8    GVTVDFPFQP-Y-----KCQQEYMTKVLECLQQKVNGIL-----ESP 43   

                   sGtGKTikGGRisDKDYkldelySskvSlLslilayqqekPlnG......
                   +GtGKT+                     lL+ +la+ ++    G + ++ 
    KIAA1088    44 TGTGKTL--------------------CLLCTTLAWREHLR-DGisarki 72   

                   ..........DRF..............DvtnqevlKiiYaSRThSqleqa
                    ++ +++  +DR  ++ ++     +++     +  KiiYaSRThSql q+
    KIAA1088    73 aeraqgelfpDRAlsswgnaaaaagdpIACYTDIPKIIYASRTHSQLTQV 122  

                   veELrKlmsyytpeigyesskflglslaSRKnLClnpeVskerqgkavne
                   + ELr+++        y      +++l SR++LC++peV k     + n+
    KIAA1088   123 INELRNTS--------YRPK---VCVLGSREQLCIHPEVKK----QESNH 157  

                   kCikltvskikeqrrekpktRGLVnkeaCeFYenldelrdrPDvkevedl
                   + i l ++k+               +++C+FY+n +e+        +e +
    KIAA1088   158 LQIHLCRKKVA--------------SRSCHFYNNVEEK-------SLEQE 186  

                   llseimdiedlveyGellglCPYfatRkalpfAniVilpYqYLLdPkiRs
                   l s i diedlv+ G ++ +CPY+++R    +A i+  pY+YLLd k R+
    KIAA1088   187 LASPILDIEDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRR 236  

                   alsleLkkdYSDsIVIFDEAHNldnvciSslSRKLsniskrslkrcskei
                   a +++Lk      +VIFDEAHN++  c++s+S    +++  +l+     i
    KIAA1088   237 AHNIDLKG----TVVIFDEAHNVEKMCEESAS---FDLTPHDLASGLDVI 279  

                   aeyfekieerklrlirevdarkGAFGS........AlldelqklvegLkq
                   +++ e   + +     e+  +   F +++++++ +  l+  +kl ++L +
    KIAA1088   280 DQVLEEQTKAA----HEGEPHP-EFSAdspspglnMELEDIAKLKMILLR 324  

                   edlltdkediflanpvlpkevlpSqLeavpgnirkaeiflhkLsryleyl
                   ++ + d     ++ p  ++ v++       +++ + e+f     ++  ++
    KIAA1088   325 LEGAID----AVELPGDDSGVTK-------PGSYIFELFAEAQITFQTKG 363  

                   klalKvlgvvselpdafleklkekteidrkplrfcseRlsnllreleith
                    +  + +  +     a + +++ +t  +         +l++ +    + +
    KIAA1088   364 CILDSLDQII--QHLAGRAGVFTNTAGLQ--------KLADIIQIVFSVD 403  

                   ve.....dfsalvllftfatlvltyt..ngflegiepyeqrnktvenpil
                   + +++++++++l  l + +  +  +++++ ++       +  +   + +l
    KIAA1088   404 PSegspgSPAGLGALQSYKVHIHPDAghRRTAQRSDAWSTTAARKRGKVL 453  

                   kfmcLDPSialkpvferGarSVilaSGTLSPldaftkiLgfntvlkdspr
                    + c+ P  ++ +++ +G+rS il+SGTL P + f   ++  +++  ++ 
    KIAA1088   454 SYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLEN- 502  

                   fSCthvlkrenlltlivtrGsDqvalsstFetRkdpslvrnHlgellvel
                       h++++ ++ + +v rG+D+  lss F++R ++  + + lg +l + 
    KIAA1088   503 ---PHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSS-LGKALGNI 548  

                   skiiPKKdGiVvFFpSYsyLeqiVstWkemGilenSNESFWEKiekkKli
                   + ++P   G+++FFpSY ++e  +  W   ++           +e+ K++
    KIAA1088   549 ARVVP--YGLLIFFPSYPVMEKSLEFWRARDLARK--------MEALKPL 588  

                   FvEtkDapqEtsdalerYkqavse..GrGAvLLsVagGKvSEGIDFsddl
                   FvE++ +    s++++ Y + v+++++ GA  L+V++GK SEG DFsd  
    KIAA1088   589 FVEPRSK-GSFSETISAYYARVAApgSTGATFLAVCRGKASEGLDFSDTN 637  

                   GRAVImvGiPYPnifdeeytesrvlkarleflrdqyqirensqtkdFyef
                   GR+VI+ G+PYP+  d +++++   ++++++  +      + q  ++y  
    KIAA1088   638 GRGVIVTGLPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQ--EWYRQ 685  

                   dAMRavnQaiGRviRhkdDYGsivLlDkRYaRsdkRkkLPkWiqdtiqss
                    A RavnQaiGRviRh+ DYG++ L D R+a  d R +LP W++ +  + 
    KIAA1088   686 QASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVRVY 735  

                   dlngstDeaIrlt<-*
                   d++g    +Ir     
    KIAA1088   736 DNFG---HVIRDV    745  

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