# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ha02541.fasta.huge -Q ../query/KIAA1089.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1089, 1033 aa vs ./tmplib.24314 library 1986472 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.4137+/-0.00677; mu= 6.2825+/- 0.460 mean_var=176.5600+/-41.436, 0's: 0 Z-trim: 4 B-trim: 3 in 1/39 Lambda= 0.096522 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0250 ( 1122 res) ha02790 (1122) 278 51.6 7.1e-07 KIAA0732 ( 1449 res) fg05988b (1449) 247 47.4 1.7e-05 >>KIAA0250 ( 1122 res) ha02790 (1122 aa) initn: 203 init1: 138 opt: 278 Z-score: 215.3 bits: 51.6 E(): 7.1e-07 Smith-Waterman score: 281; 25.000% identity (56.977% similar) in 344 aa overlap (73-396:64-389) 50 60 70 80 90 100 KIAA10 AVVEAVHRLDLILCNKTAYQEVFKPENISLRNKLRELCVKLMFLHPVDYG--RKAEELLW :. :..: : :.. ..:. .:.:. :: KIAA02 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQK-MLVTDLEYALDKKVEQDLW 40 50 60 70 80 90 110 120 130 140 150 KIAA10 RKVYYEVIQLIKTNKKH--IHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQLELQCCI ... . : .. . :. .:: .. : :. ::: .:: . . ....: : . KIAA02 NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 100 110 120 130 140 150 160 170 180 190 200 210 KIAA10 DWTHVTDPLIGCKKP-VSASGKEMDWA-QMACHRCLVYLGDLSRYQNELAGVDTELLAER ... .:. :. .:: : .. . .. :..:::.:::..::.:. . :: KIAA02 KSSQL--GIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQ------AES 160 170 180 190 200 220 230 240 250 260 270 KIAA10 FYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNLKRLYDKA .: .: ...:. :.:.:::. ::.:: .. ... : : : . : .: ::.. .:: KIAA02 YYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 210 220 230 240 250 260 280 290 300 310 320 KIAA10 AKMYHQLKKCETRKLSPGKKRCKDIKRLLVNF---MYL-QSL--LQPKSSSVDSELTSL- :.: : .:. . ...: .:: .:: :.: ... .. : KIAA02 L---------ESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLL 270 280 290 300 310 330 340 350 360 370 380 KIAA10 ------CQSVLEDFNLCLFYLPSSPNLSLASEDEEEYESGYAFLPDLLIFQMVIICLMCV :.... . :: : ..: .:.. .. .:: . : .. ..: KIAA02 FQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWTQLLALFMSFLGILCK 320 330 340 350 360 370 390 400 410 420 430 440 KIAA10 HSLERAGSKQ-YSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSDGTDEPESKE :. .... :.: KIAA02 CPLQNESQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPHE 380 390 400 410 420 430 >>KIAA0732 ( 1449 res) fg05988b (1449 aa) initn: 369 init1: 185 opt: 247 Z-score: 190.5 bits: 47.4 E(): 1.7e-05 Smith-Waterman score: 288; 24.766% identity (52.570% similar) in 428 aa overlap (13-411:578-959) 10 20 30 40 KIAA10 WWVAGACDRELPPDP-GTMSQGP-PTGESSEPEAKVLHTKRL : : : . .: ::. : :: : . : KIAA07 SQYPYTGYNPLQYPVGPTNGVYPGPYYPGYPTPSGQYVCSPLPTSTMS-PEEVEQHMRNL 550 560 570 580 590 600 50 60 70 80 90 KIAA10 YRAVVEAVHRL-------DLILCNKTAYQEVFKPENISLRNKLRELCVKLM---FLHPVD . . .::: .: : : . ... .::.. .:: ..:. .: .. KIAA07 QQ---QELHRLLRVADNQELQLSNLLSRDRI-SPEGLEKMAQLRAELLQLYERCILLDIE 610 620 630 640 650 660 100 110 120 130 140 KIAA10 YG--RKAEELLWRKVYYEVI----QLIKT----NKKHIHSRSTLECAYRTHLVAGIGFYQ .. ......::....:.:: ::.: : ..:..: :: : : :.. KIAA07 FSDNQNVDQILWKNAFYQVIEKFRQLVKDPNVENPEQIRNR-LLEL-----LDEGSDFFD 670 680 690 700 710 150 160 170 180 190 200 KIAA10 HLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASGKEMDWAQMACHRCLVYLGDLSR :: .: :...:. :. : : .::. : . .: .. .::.. ::..: KIAA07 SLLQKLQVTYKFKLE---DYM---DGLAIRSKPLR---KTVKYALISAQRCMICQGDIAR 720 730 740 750 760 210 220 230 240 250 260 KIAA10 YQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEV :... . . . :. .: .: .::. : :.:::. :: ...:.: :.: . . KIAA07 YREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASN 770 780 790 800 810 820 270 280 290 300 310 KIAA10 SFEGAYGNLKRLYDKAAKMYHQL--KKCETRKLSPGKKRCKDIKRLLVNFMYLQSLLQPK . : .: :.... . .:. :. : ::: . : . : KIAA07 PILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWR------------------KGK 830 840 850 860 320 330 340 350 360 370 KIAA10 SSSVDSELTSLCQSVLEDFN-LCLFYLPSSPNLSLASED--EEEYESGYAFLPDLLIFQM .:. . : .: . : .. :: : : ..:. . : :.: . : . . KIAA07 KSTF--------RHVGDDTTRLEIWIHPSHPRSSQGTESGKDSEQENGLGSLSPSDLNKR 870 880 890 900 910 920 380 390 400 410 420 430 KIAA10 VIICLMCVHS--LERAGSKQYSAAIAFTLALFSHLVNHVNIRLQAELEEGENPVPAFQSD :. .. .:. . : : . . :. .: :. :..: KIAA07 FILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVH 930 940 950 960 970 980 440 450 460 470 480 490 KIAA10 GTDEPESKEPVEKEEEPDPEPPPVTPQVGEGRKSRKFSRLSCLRRRRHPPKVGDDSDLSE KIAA07 NSQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKESAKAQLSSPEDQDDQDDIK 990 1000 1010 1020 1030 1040 1033 residues in 1 query sequences 1986472 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:42 2008 done: Thu Dec 18 15:08:43 2008 Total Scan time: 0.700 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]