hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17043572/chunk_1/iprscan-20080501-17043572.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1089 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00670 68.9 6.2e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00670 1/1 872 995 .. 1 146 [] 68.9 6.2e-16 Alignments of top-scoring domains: SM00670: domain 1 of 1, from 872 to 995: score 68.9, E = 6.2e-16 *->mkvvlDTnvlidgllardaleklle..kgevyipptVleEleylakg ++v+DT +l ++l ++++l+ +++++v+ip+tV++ l+ l+ KIAA1089 872 PYLVPDTQALCHHL---PVIRQLATsgRFIVIIPRTVIDGLDLLK-- 913 ifgke.gekaleslkkleelalegkikleilleerksilyvLdylvllla +++ a++ +++le ++++g++ ++ ++e++ks KIAA1089 914 ----KeHPGARDGIRYLEAEFKKGNRYIRCQKEVGKS------------- 946 tleeeelerlslkketeiyynllpnDalilatAkelge.......rnvvL +e+++l+r + +++t +il+++k+l ++ +++++ + KIAA1089 947 -FERHKLKRQDADAWT---------LYKILDSCKQLTLaqgageeDPSGM 986 vTnDrdlrr<-* vT +l KIAA1089 987 VTIITGLPL 995 //