hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17144958/chunk_1/iprscan-20080501-17144958.nocrc
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Query sequence: KIAA1095
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)         131.9    1.7e-36   2
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)         127.9    2.6e-35   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           26.4    6.4e-09   1
PF02176.8.fs TRAF-type zinc finger                           27.1    1.1e-07   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           23.3    0.00056   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00097.15.ls   1/1      50    88 ..     1    50 []    23.3  0.00056
PF00097.15.fs   1/1      50    85 ..     1    48 [.    26.4  6.4e-09
PF02176.8.fs   1/1     133   171 ..     1    41 [.    27.1  1.1e-07
PF00595.14.ls   1/2     281   368 ..     1    86 []    68.5  1.9e-17
PF00595.14.fs   1/2     281   368 ..     1    86 []    66.6  4.7e-18
PF00595.14.fs   2/2     451   533 ..     1    86 []    61.3  1.4e-16
PF00595.14.ls   2/2     451   533 ..     1    86 []    63.3  7.2e-16

Alignments of top-scoring domains:
PF00097.15.ls: domain 1 of 1, from 50 to 88: score 23.3, E = 0.00056
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C+  l++p      ++pCgH      fC  C++ w+    + +C
    KIAA1095    50    CALCHKVLEDPL-----TTPCGHV-----FCAGCVLPWVV--QEGSC 84   

                   pl.C<-*
                   p +C   
    KIAA1095    85 PArC    88   

PF00097.15.fs: domain 1 of 1, from 50 to 85: score 26.4, E = 6.4e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C+  l++p      ++pCgH      fC  C++ w+    + +C
    KIAA1095    50    CALCHKVLEDPL-----TTPCGHV-----FCAGCVLPWVV--QEGSC 84   

                   p<-*
                   p   
    KIAA1095    85 P    85   

PF02176.8.fs: domain 1 of 1, from 133 to 171: score 27.1, E = 1.1e-07
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrev<-*
                      H++  C f+p  C + +Cg + +lR+d+++H +++C  r+v   
    KIAA1095   133    HLE-RCDFAPARCRHAGCG-QVLLRRDVEAHMRDACDARPV    171  

PF00595.14.ls: domain 1 of 2, from 281 to 368: score 68.5, E = 1.9e-17
                   *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA
                      +++l++    g+lGf+i gg +   ++++++ +gifvs+++   +aA
    KIAA1095   281    TLVLHR--DSGSLGFNIIGGRPSVDnhdgssSEGIFVSKIVDSGPAA 325  

                   eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + gG Lq++D+I++vNG+dl+  +h++av+a k +++ ++ + vl   
    KIAA1095   326 KEGG-LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKE-PIVVQVL    368  

PF00595.14.fs: domain 1 of 2, from 281 to 368: score 66.6, E = 4.7e-18
                   *->evtlekedkrgglGfsikggsdkga......dkgifvsevlpGsgaA
                      +++l++    g+lGf+i gg +   ++++++ +gifvs+++   +aA
    KIAA1095   281    TLVLHR--DSGSLGFNIIGGRPSVDnhdgssSEGIFVSKIVDSGPAA 325  

                   eagGrLqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + gG Lq++D+I++vNG+dl+  +h++av+a k +++ ++ + vl   
    KIAA1095   326 KEGG-LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKE-PIVVQVL    368  

PF00595.14.fs: domain 2 of 2, from 451 to 533: score 61.3, E = 1.4e-16
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ev l + +++ +lG+++   +d++ d gi++se+ p+ + A+++Gr+
    KIAA1095   451    EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPN-SIAAKDGRI 496  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GD+I+++NG  + n  +e ++l++ + ++   +L+++   
    KIAA1095   497 REGDRIIQINGIEVQNR-EEAVALLTSEENK-NFSLLIA    533  

PF00595.14.ls: domain 2 of 2, from 451 to 533: score 63.3, E = 7.2e-16
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ev l + +++ +lG+++   +d++ d gi++se+ p+ + A+++Gr+
    KIAA1095   451    EVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPN-SIAAKDGRI 496  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GD+I+++NG  + n  +e ++l++ + ++   +L+++   
    KIAA1095   497 REGDRIIQINGIEVQNR-EEAVALLTSEENK-NFSLLIA    533  

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