hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17294479/chunk_1/iprscan-20080501-17294479.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1104 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08367.1.fs Peptidase M16C associated 374.3 2.2e-115 1 PF08367.1.ls Peptidase M16C associated 376.3 4.4e-110 1 PF05193.11.fs Peptidase M16 inactive domain 78.6 9.5e-22 2 PF05193.11.ls Peptidase M16 inactive domain 78.2 2.3e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08367.1.fs 1/1 103 351 .. 1 253 [] 374.3 2.2e-115 PF08367.1.ls 1/1 103 351 .. 1 253 [] 376.3 4.4e-110 PF05193.11.fs 2/2 359 558 .. 1 198 [] 76.3 4e-21 PF05193.11.ls 1/1 359 558 .. 1 198 [] 78.2 2.3e-20 Alignments of top-scoring domains: PF08367.1.fs: domain 1 of 1, from 103 to 351: score 374.3, E = 2.2e-115 *->msPdedlekkeeeeErekLekkkssLsEeDkeeIiergleLeelQst m Pd + +k+++ E +kL++k+++Ls+ D+++I+e+gleL++ Qs KIAA1104 103 MRPDDKYHEKQAQVEATKLKQKVEALSPGDRQQIYEKGLELRSQQSK 149 peSeEdLscLPtLtlsDIpksideypleee.dvgdvkVlhhdvdTNGIvY p+ d scLP+L++sDI++ i+ ++l++ +gd++V+++ ++TNG+vY KIAA1104 150 PQ---DASCLPALKVSDIEPTIPVTELDVVlTAGDIPVQYCAQPTNGMVY 196 vrlvfdlndaLPeellPyLPLfcsvltklGTenysYreleeeIklkTGGI +r++++ln LPeel Py+PLfcsvltklG++ ++Yre++++I+lkTGG+ KIAA1104 197 FRAFSSLN-TLPEELRPYVPLFCSVLTKLGCGLLDYREQAQQIELKTGGM 245 sfsvsvssnpddtdeyelsfaisGkALnskvpklFeLiseilnetdFdde s+s++v ++ + +d+ye+++ +s+ +L++++p++++L+sei+n++ F e KIAA1104 246 SASPHVLPDDSHMDTYEQGVLFSSLCLDRNLPDMMQLWSEIFNNPCFEEE 295 eeRLkeLiresasrlensiadSGHsyAasraasylSiagaisEqlgGleq e +k+L+++ a++l n+i dSGH yA++ra++ l++ag+++E+++G++q KIAA1104 296 E-HFKVLVKMTAQELANGIPDSGHLYASIRAGRTLTPAGDLQETFSGMDQ 344 vkfikeL<-* v+++k++ KIAA1104 345 VRLMKRI 351 PF08367.1.ls: domain 1 of 1, from 103 to 351: score 376.3, E = 4.4e-110 *->msPdedlekkeeeeErekLekkkssLsEeDkeeIiergleLeelQst m Pd + +k+++ E +kL++k+++Ls+ D+++I+e+gleL++ Qs KIAA1104 103 MRPDDKYHEKQAQVEATKLKQKVEALSPGDRQQIYEKGLELRSQQSK 149 peSeEdLscLPtLtlsDIpksideypleee.dvgdvkVlhhdvdTNGIvY p+ d scLP+L++sDI++ i+ ++l++ +gd++V+++ ++TNG+vY KIAA1104 150 PQ---DASCLPALKVSDIEPTIPVTELDVVlTAGDIPVQYCAQPTNGMVY 196 vrlvfdlndaLPeellPyLPLfcsvltklGTenysYreleeeIklkTGGI +r++++ln LPeel Py+PLfcsvltklG++ ++Yre++++I+lkTGG+ KIAA1104 197 FRAFSSLN-TLPEELRPYVPLFCSVLTKLGCGLLDYREQAQQIELKTGGM 245 sfsvsvssnpddtdeyelsfaisGkALnskvpklFeLiseilnetdFdde s+s++v ++ + +d+ye+++ +s+ +L++++p++++L+sei+n++ F e KIAA1104 246 SASPHVLPDDSHMDTYEQGVLFSSLCLDRNLPDMMQLWSEIFNNPCFEEE 295 eeRLkeLiresasrlensiadSGHsyAasraasylSiagaisEqlgGleq e +k+L+++ a++l n+i dSGH yA++ra++ l++ag+++E+++G++q KIAA1104 296 E-HFKVLVKMTAQELANGIPDSGHLYASIRAGRTLTPAGDLQETFSGMDQ 344 vkfikeL<-* v+++k++ KIAA1104 345 VRLMKRI 351 PF05193.11.fs: domain 2 of 2, from 359 to 558: score 76.3, E = 4e-21 *->sltredLkdFykkhYspdnmvlvvvGdvdhd..ellalaekyfgdlp + + +L k +++dnm ++v + + ++ ++ +e+++ ++ KIAA1104 359 PI-LRKLPRIKKHLLNGDNMRCSVNA-TPQQmpQTEKAVEDFLRSIG 403 askeknl.vppl.v...mA..............kgkpr.pplepakl.g. +sk++ ++v+p++v+++++++++++ + +++++ + + +++ + + + KIAA1104 404 RSKKERRpVRPHtVekpVPsssggdahvphgsqVIRKLvMEPTFKPWqMk 453 evvvp.kdvpqahlalafpgpplsddpdsaaldvLnelLggggggmsSrL ++++++ + ++++ + +++p+ +dpd+a l++L++l+ L KIAA1104 454 THFLMpFP--VNYVGECIRTVPY-TDPDHASLKILARLMTAK------FL 494 fqelrekegLpaysvsafldsysyndddtGlfgiya.tdpegenleeRvl ++e+r ++g+ ay+ +a l+ + G+f++y+ +dp+ e +l KIAA1104 495 HTEIR-EKGG-AYGGGAKLS-------HNGIFTLYSyRDPN---TIE-TL 531 elileeleklaeeGiteeeleraknql<-* +++ +++++ +++++t++++++ak + KIAA1104 532 QSFGKAVDWAKSGKFTQQDIDEAKLSV 558 PF05193.11.ls: domain 1 of 1, from 359 to 558: score 78.2, E = 2.3e-20 *->sltredLkdFykkhYspdnmvlvvvGdvdhd..ellalaekyfgdlp + + +L k +++dnm ++v + + ++ ++ +e+++ ++ KIAA1104 359 PI-LRKLPRIKKHLLNGDNMRCSVNA-TPQQmpQTEKAVEDFLRSIG 403 askeknl.vppl.v...mA..............kgkpr.pplepakl.g. +sk++ ++v+p++v+++++++++++ + +++++ + + +++ + + + KIAA1104 404 RSKKERRpVRPHtVekpVPsssggdahvphgsqVIRKLvMEPTFKPWqMk 453 evvvp.kdvpqahlalafpgpplsddpdsaaldvLnelLggggggmsSrL ++++++ + ++++ + +++p+ +dpd+a l++L++l+ L KIAA1104 454 THFLMpFP--VNYVGECIRTVPY-TDPDHASLKILARLMTAK------FL 494 fqelrekegLpaysvsafldsysyndddtGlfgiya.tdpegenleeRvl ++e+r ++g+ ay+ +a l+ + G+f++y+ +dp+ e +l KIAA1104 495 HTEIR-EKGG-AYGGGAKLS-------HNGIFTLYSyRDPN---TIE-TL 531 elileeleklaeeGiteeeleraknql<-* +++ +++++ +++++t++++++ak + KIAA1104 532 QSFGKAVDWAKSGKFTQQDIDEAKLSV 558 //