hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17330207/chunk_1/iprscan-20080501-17330207.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1106 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08474.2.ls Myelin transcription factor 1 710.3 1.3e-210 1 PF08474.2.fs Myelin transcription factor 1 708.4 4.6e-210 1 PF01530.9.ls Zinc finger, C2HC type 404.3 1.6e-118 6 PF01530.9.fs Zinc finger, C2HC type 397.2 2.2e-116 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01530.9.ls 1/6 50 80 .. 1 31 [] 68.3 2.3e-17 PF01530.9.fs 1/7 50 80 .. 1 31 [] 66.3 9.1e-17 PF01530.9.fs 2/7 471 501 .. 1 31 [] 59.6 5.7e-15 PF01530.9.ls 2/6 471 501 .. 1 31 [] 61.6 2.4e-15 PF01530.9.ls 3/6 515 545 .. 1 31 [] 67.0 5.6e-17 PF01530.9.fs 3/7 515 545 .. 1 31 [] 65.0 2e-16 PF08474.2.fs 1/1 589 841 .. 1 270 [] 708.4 4.6e-210 PF08474.2.ls 1/1 589 841 .. 1 270 [] 710.3 1.3e-210 PF01530.9.ls 4/6 870 900 .. 1 31 [] 73.8 5.2e-19 PF01530.9.fs 5/7 870 900 .. 1 31 [] 71.8 2e-18 PF01530.9.ls 5/6 919 949 .. 1 31 [] 68.3 2.3e-17 PF01530.9.fs 6/7 919 949 .. 1 31 [] 66.3 9.1e-17 PF01530.9.ls 6/6 972 1002 .. 1 31 [] 65.4 1.7e-16 PF01530.9.fs 7/7 972 1002 .. 1 31 [] 63.4 5.5e-16 Alignments of top-scoring domains: PF01530.9.ls: domain 1 of 6, from 50 to 80: score 68.3, E = 2.3e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CPtpGCdGsGHv+Gky++Hrs++GCPla KIAA1106 50 LFSCPTPGCDGSGHVSGKYARHRSVYGCPLA 80 PF01530.9.fs: domain 1 of 7, from 50 to 80: score 66.3, E = 9.1e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +++CPtpGCdGsGHv+Gky++Hrs++GCPla KIAA1106 50 LFSCPTPGCDGSGHVSGKYARHRSVYGCPLA 80 PF01530.9.fs: domain 2 of 7, from 471 to 501: score 59.6, E = 5.7e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA1106 471 ESKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 501 PF01530.9.ls: domain 2 of 6, from 471 to 501: score 61.6, E = 2.4e-15 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* e kCPtpGCdG+GHvtG y +HrslsGCP++ KIAA1106 471 ESKCPTPGCDGTGHVTGLYPHHRSLSGCPHK 501 PF01530.9.ls: domain 3 of 6, from 515 to 545: score 67.0, E = 5.6e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv+++++sHrslsGCP+a KIAA1106 515 VLKCPTPGCTGRGHVNSNRNSHRSLSGCPIA 545 PF01530.9.fs: domain 3 of 7, from 515 to 545: score 65.0, E = 2e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* +lkCPtpGC+G+GHv+++++sHrslsGCP+a KIAA1106 515 VLKCPTPGCTGRGHVNSNRNSHRSLSGCPIA 545 PF08474.2.fs: domain 1 of 1, from 589 to 841: score 708.4, E = 4.6e-210 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nV++ttPR+nlAKElEK+SK+sF+Y+S+D++++GKRa+APkvQT KIAA1106 589 YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQT 635 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk ++iSPK+y+dAk+++Kd+SP+sss+SsY++sssS++S+GGG+sasST++k KIAA1106 636 RDISPKGYDDAKRYCKDPSPSSSSTSSYAPSSSSNLSCGGGSSASSTCSK 685 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE SSFDY++d+EaaHm AAtAILNLSTRCREmp+nLStKPQdLCa++++d+E KIAA1106 686 SSFDYTHDMEAAHM-AATAILNLSTRCREMPQNLSTKPQDLCATRNPDME 734 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSM+K+R+rd Sc++i+Tp++P+Spq++ KIAA1106 735 VDENGTLDLSMNKQRPRD-------SCCPILTPLEPMSPQQQ-------- 769 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee a++n+r++Q l+e+d+WdlPvdYtKmKprr+dE+Esk+++P+dld+++e+ KIAA1106 770 AVMNNRCFQ-LGEGDCWDLPVDYTKMKPRRIDEDESKDITPEDLDPFQEA 818 leekkfagEvsIPSPKPkyeeRk<-* lee++++gEv+IPSPKPky+++k KIAA1106 819 LEERRYPGEVTIPSPKPKYPQCK 841 PF08474.2.ls: domain 1 of 1, from 589 to 841: score 710.3, E = 1.3e-210 *->YRsnVAittPRAnlAKElEKFSKvsFdYaSFDaqvFGKRalAPkvQT YR+nV++ttPR+nlAKElEK+SK+sF+Y+S+D++++GKRa+APkvQT KIAA1106 589 YRNNVPTTTPRSNLAKELEKYSKTSFEYNSYDNHTYGKRAIAPKVQT 635 seiSPKayqdAkpFpKdsSPessssSsYvksssSssSaGGGasasSTvrk ++iSPK+y+dAk+++Kd+SP+sss+SsY++sssS++S+GGG+sasST++k KIAA1106 636 RDISPKGYDDAKRYCKDPSPSSSSTSSYAPSSSSNLSCGGGSSASSTCSK 685 SSFDYsqdaEaaHmAAAtAILNLSTRCREmpdnLStKPQdLCaaksadiE SSFDY++d+EaaHm AAtAILNLSTRCREmp+nLStKPQdLCa++++d+E KIAA1106 686 SSFDYTHDMEAAHM-AATAILNLSTRCREMPQNLSTKPQDLCATRNPDME 734 VDENGTLDLSMkKnRkrdksiPssSScssiaTpksPdSpqkasstsAPSS VDENGTLDLSM+K+R+rd Sc++i+Tp++P+Spq++ KIAA1106 735 VDENGTLDLSMNKQRPRD-------SCCPILTPLEPMSPQQQ-------- 769 alvnarsyQAlseqdeWdlPvdYtKmKprrldEeEskekdPvdldfalee a++n+r++Q l+e+d+WdlPvdYtKmKprr+dE+Esk+++P+dld+++e+ KIAA1106 770 AVMNNRCFQ-LGEGDCWDLPVDYTKMKPRRIDEDESKDITPEDLDPFQEA 818 leekkfagEvsIPSPKPkyeeRk<-* lee++++gEv+IPSPKPky+++k KIAA1106 819 LEERRYPGEVTIPSPKPKYPQCK 841 PF01530.9.ls: domain 4 of 6, from 870 to 900: score 73.8, E = 5.2e-19 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA1106 870 ELKCPTPGCDGSGHITGNYASHRSLSGCPRA 900 PF01530.9.fs: domain 5 of 7, from 870 to 900: score 71.8, E = 2e-18 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* elkCPtpGCdGsGH+tG+y+sHrslsGCP+a KIAA1106 870 ELKCPTPGCDGSGHITGNYASHRSLSGCPRA 900 PF01530.9.ls: domain 5 of 6, from 919 to 949: score 68.3, E = 2.3e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CP+pGCdG+GH+tGky+sHrs+sGCPla KIAA1106 919 PIRCPVPGCDGQGHITGKYASHRSASGCPLA 949 PF01530.9.fs: domain 6 of 7, from 919 to 949: score 66.3, E = 9.1e-17 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CP+pGCdG+GH+tGky+sHrs+sGCPla KIAA1106 919 PIRCPVPGCDGQGHITGKYASHRSASGCPLA 949 PF01530.9.ls: domain 6 of 6, from 972 to 1002: score 65.4, E = 1.7e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGHv+G++ +HrslsGCP+a KIAA1106 972 GMSCPTPGCDGSGHVSGSFLTHRSLSGCPRA 1002 PF01530.9.fs: domain 7 of 7, from 972 to 1002: score 63.4, E = 5.5e-16 *->elkCPtpGCdGsGHvtGkytsHrslsGCPla<-* ++CPtpGCdGsGHv+G++ +HrslsGCP+a KIAA1106 972 GMSCPTPGCDGSGHVSGSFLTHRSLSGCPRA 1002 //