hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17362658/chunk_1/iprscan-20080501-17362658.nocrc
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Query sequence: KIAA1108
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00566.9.ls TBC domain                                     113.9    4.3e-31   1
PF00566.9.fs TBC domain                                     112.0    7.6e-31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00566.9.fs   1/1     392   611 ..     1   219 []   112.0  7.6e-31
PF00566.9.ls   1/1     392   611 ..     1   219 []   113.9  4.3e-31

Alignments of top-scoring domains:
PF00566.9.fs: domain 1 of 1, from 392 to 611: score 112.0, E = 7.6e-31
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde
                      v  Gvp   r+++W  +     l+   +  +++++ +Y +ll++  +
    KIAA1108   392    VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKqqpkdvpYKELLKQLTS 438  

                   kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg
                      +    I  D+ Rt +    F  +  G g+ +L ++L AYs    +vg
    KIAA1108   439 QQHA----ILIDLGRTFPTHPYFSAQ-LGAGQLSLYNILKAYSLLDQEVG 483  

                   YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq
                   YcQG   va  +Ll + SEe+AF +L  L+      K y pd+       
    KIAA1108   484 YCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQM 532  

                   kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf
                     L   + +    LY +L+ + +  + ++ pwfL+++a   Pl    r+f
    KIAA1108   533 YQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVF 582  

                   DiLFadGivllfrvaLAvLkilkeqiLda<-*
                   D+ F  G  + f+vaL  L + k  iL++   
    KIAA1108   583 DMIFLQGTEVIFKVALSLLGSHKPLILQH    611  

PF00566.9.ls: domain 1 of 1, from 392 to 611: score 113.9, E = 4.3e-31
                   *->vkeGvpsstrakVWavcsgAyqlrYAsage.......Yerllrrgde
                      v  Gvp   r+++W  +     l+   +  +++++ +Y +ll++  +
    KIAA1108   392    VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKqqpkdvpYKELLKQLTS 438  

                   kesqavdkIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvg
                      +    I  D+ Rt +    F  +  G g+ +L ++L AYs    +vg
    KIAA1108   439 QQHA----ILIDLGRTFPTHPYFSAQ-LGAGQLSLYNILKAYSLLDQEVG 483  

                   YcQGMNVvaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDq
                   YcQG   va  +Ll + SEe+AF +L  L+      K y pd+       
    KIAA1108   484 YCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQM 532  

                   kvLdsfveellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIf
                     L   + +    LY +L+ + +  + ++ pwfL+++a   Pl    r+f
    KIAA1108   533 YQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVF 582  

                   DiLFadGivllfrvaLAvLkilkeqiLda<-*
                   D+ F  G  + f+vaL  L + k  iL++   
    KIAA1108   583 DMIFLQGTEVIFKVALSLLGSHKPLILQH    611  

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