hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17403254/chunk_1/iprscan-20080501-17403254.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1110 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01369.11.ls Sec7 domain 228.9 1e-65 1 PF01369.11.fs Sec7 domain 227.0 3.8e-65 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01369.11.fs 1/1 206 397 .. 1 221 [] 227.0 3.8e-65 PF01369.11.ls 1/1 206 397 .. 1 221 [] 228.9 1e-65 Alignments of top-scoring domains: PF01369.11.fs: domain 1 of 1, from 206 to 397: score 227.0, E = 3.8e-65 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle rk+ +g + FN P+kGi++Lis+g+++ ++p +A fLl KIAA1110 206 DTLRKRLYRIGLNLFNINPDKGIQFLISRGFIP--DTPIGVAHFLL- 249 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + LdeALR+f KIAA1110 250 QRKGLSRQMIGEFLGNsKKQFNRDVLDCVVD-EMDFSSMELDEALRKFQA 298 sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd +R GEaQk +R++eaFS+rY++c Np+v ++f n KIAA1110 299 HIRVQGEAQKVERLIEAFSQRYCMC--NPEVvqqFHNP------------ 334 aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE D+ ++L++++I+LNTD +p++K+++ kM ledFi+N+r KIAA1110 335 -DTIFILAFAIILLNTDMY-SPNIKpDR--KMMLEDFIRNLR-------- 372 YEELgindGgDlprefLtelYesIkneei<-* g++dG+D+pre+ +Ye I+ +e+ KIAA1110 373 ----GVDDGADIPRELVVGIYERIQQKEL 397 PF01369.11.ls: domain 1 of 1, from 206 to 397: score 228.9, E = 1e-65 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle rk+ +g + FN P+kGi++Lis+g+++ ++p +A fLl KIAA1110 206 DTLRKRLYRIGLNLFNINPDKGIQFLISRGFIP--DTPIGVAHFLL- 249 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + LdeALR+f KIAA1110 250 QRKGLSRQMIGEFLGNsKKQFNRDVLDCVVD-EMDFSSMELDEALRKFQA 298 sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd +R GEaQk +R++eaFS+rY++c Np+v ++f n KIAA1110 299 HIRVQGEAQKVERLIEAFSQRYCMC--NPEVvqqFHNP------------ 334 aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE D+ ++L++++I+LNTD +p++K+++ kM ledFi+N+r KIAA1110 335 -DTIFILAFAIILLNTDMY-SPNIKpDR--KMMLEDFIRNLR-------- 372 YEELgindGgDlprefLtelYesIkneei<-* g++dG+D+pre+ +Ye I+ +e+ KIAA1110 373 ----GVDDGADIPRELVVGIYERIQQKEL 397 //