hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17403254/chunk_1/iprscan-20080501-17403254.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1110
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00222                                                 308.0    6.8e-88   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00222    1/1     206   397 ..     1   226 []   308.0  6.8e-88

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 206 to 397: score 308.0, E = 6.8e-88
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      +  rk+l+ +g ++fn +P+kGiqfL+++gf++    d+p  vA+fl
    KIAA1110   206    DTLRKRLYRIGLNLFNINPDKGIQFLISRGFIP----DTPIGVAHFL 248  

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                              +++gl++++iG++Lg+s ++fnr+vL++ vd++dFs ++
    KIAA1110   249 L----------QRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSSME 288  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ldeALR+f  ++r++GEaQk++Rl+eaFs+rYc+cNp+v +++       
    KIAA1110   289 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFH------ 332  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       n+D++++La+++I+LNTD+++pn+k  +      KM +edFi+Nlr
    KIAA1110   333 ----NPDTIFILAFAIILLNTDMYSPNIKPDR------KMMLEDFIRNLR 372  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g++    dg d+pre+  ++Y++I+ +e+   
    KIAA1110   373 GVD----DGADIPRELVVGIYERIQQKEL    397  

//