hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17420856/chunk_1/iprscan-20080501-17420856.nocrc
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Query sequence: KIAA1111
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02373.13.fs JmjC domain                                     53.6    2.1e-15   2
PF00628.19.fs PHD-finger                                      46.6    1.5e-14   1
PF00628.19.ls PHD-finger                                      48.6      2e-11   1
PF02373.13.ls JmjC domain                                     45.8    1.4e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00628.19.fs   1/1      67   116 ..     1    51 []    46.6  1.5e-14
PF00628.19.ls   1/1      67   116 ..     1    51 []    48.6    2e-11
PF02373.13.fs   1/2     294   329 ..     1    37 [.    18.3  5.7e-05
PF02373.13.ls   1/1     294   394 ..     1   126 []    45.8  1.4e-10
PF02373.13.fs   2/2     359   394 ..    91   126 .]    35.4  5.1e-10

Alignments of top-scoring domains:
PF00628.19.fs: domain 1 of 1, from 67 to 116: score 46.6, E = 1.5e-14
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.WyCp
                      yC  C+ + +d   +++ CD C +wfH++C+g  +e++   + ++Cp
    KIAA1111    67    YC-LCRLP-YDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDlYHCP 111  

                   eCkpk<-*
                   +C+     
    KIAA1111   112 NCEVL    116  

PF00628.19.ls: domain 1 of 1, from 67 to 116: score 48.6, E = 2e-11
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe.WyCp
                      yC  C+ + +d   +++ CD C +wfH++C+g  +e++   + ++Cp
    KIAA1111    67    YC-LCRLP-YDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDlYHCP 111  

                   eCkpk<-*
                   +C+     
    KIAA1111   112 NCEVL    116  

PF02373.13.fs: domain 1 of 2, from 294 to 329: score 18.3, E = 5.7e-05
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgi<-*
                      ++ +++  S+t++Hi+  g++ ++y+ +++ k+ Y+i   
    KIAA1111   294    YCLMSVRDSYTDFHIDFGGTS-VWYHVLKGEKIFYLI    329  

PF02373.13.ls: domain 1 of 1, from 294 to 394: score 45.8, E = 1.4e-10
                   *->wlYvGmpfSttpwHiEdqglySinylhfgapkvWYgiPseyaekfek
                      ++ +++  S+t++Hi+  g++ ++y+ +++ k   +++  ++  ++ 
    KIAA1111   294    YCLMSVRDSYTDFHIDFGGTS-VWYHVLKGEK---IFYLIRPTNAN- 335  

                   lakvlskhfsaPdlnggeqpdldlrhlvtlisPkvleLrengipvyrfvQ
                       l + +s+ + ++        +++ +++++++           ++  
    KIAA1111   336 --LTLFECWSSSSNQN-------EMFFGDQVDKCY-----------KCSV 365  

                   kpGEfVitfPgayHavfNlGfniaeavNF<-*
                   k+G+++++++g++Hav++  +++a+  NF   
    KIAA1111   366 KQGQTLFIPTGWIHAVLTPVDCLAFGGNF    394  

PF02373.13.fs: domain 2 of 2, from 359 to 394: score 35.4, E = 5.1e-10
                   *->pvyrfvQkpGEfVitfPgayHavfNlGfniaeavNF<-*
                      ++y++  k+G+++++++g++Hav++  +++a+  NF   
    KIAA1111   359    KCYKCSVKQGQTLFIPTGWIHAVLTPVDCLAFGGNF    394  

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