hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17420856/chunk_1/iprscan-20080501-17420856.nocrc
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Query sequence: KIAA1111
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00558                                                 178.2    8.2e-49   1
SM00249                                                  47.3      2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00249    1/1      67   114 ..     1    39 []    47.3    2e-09
SM00558    1/1     255   411 ..     1   214 []   178.2  8.2e-49

Alignments of top-scoring domains:
SM00249: domain 1 of 1, from 67 to 114: score 47.3, E = 2e-09
                   *->yCvCgk.....g.llqCdkgCdrwyHv.Clgpple..epdg.wyCpr
                      yC+C+ + + +  ++ Cd +C++w+H +C+g ++e+ +  + + Cp+
    KIAA1111    67    YCLCRLpydvtRfMIECD-MCQDWFHGsCVGVEEEkaADIDlYHCPN 112  

                   Ck<-*
                   C    
    KIAA1111   113 CE    114  

SM00558: domain 1 of 1, from 255 to 411: score 178.2, E = 8.2e-49
                   *->lylqqlwnlaklPffeytdpkpksgklnllsdlpkerywedilgpdv
                      +++++l+nl++ P               ++++l+    w+++l+p +
    KIAA1111   255    FSDTRLSNLVETP--------------KIVRKLS----WVENLWPEE 283  

                   gk...PkpkpylymGmaEsrgstTpwHiDdydlySvNylhqgagedGKrW
                   ++ ++P++++y++m++    +s+T++HiD++++  ++++h+++ge  K++
    KIAA1111   284 CVferPNVQKYCLMSVR---DSYTDFHIDFGGT--SVWYHVLKGE--KIF 326  

                   yliPpedaeklekllkkhgkefhistapdlfkeqpdllihlstwispevl
                   yli+p+ a+  + ++                       + +s+ +++ ++
    KIAA1111   327 YLIRPTNANLTLFEC-----------------------WSSSSNQNEMFF 353  

                   kkrlkeeperPlfqgvpvyrfvQkpGefvfiPpGwyHaVfnlGkfniava
                   +++             ++y++ +k+G+++fiP+Gw+HaV++++ +++a++
    KIAA1111   354 GDQV-----------DKCYKCSVKQGQTLFIPTGWIHAVLTPV-DCLAFG 391  

                   vNFaspewlpmglrlveelr<-*
                   +NF+++++++m+l+++e ++   
    KIAA1111   392 GNFLHSLNIEMQLKAYEIEK    411  

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