hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17452255/chunk_1/iprscan-20080501-17452255.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1113 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00502 164.5 1e-44 1 SM00297 113.9 1.8e-29 1 SM00336 99.5 4e-25 2 SM00249 55.3 8.2e-12 2 SM00184 50.9 1.7e-10 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00249 1/2 128 189 .. 1 39 [] 3.2 18 SM00184 1/2 129 188 .. 1 23 [] 43.2 3.4e-08 SM00336 1/2 216 263 .. 1 51 [] 48.2 1.1e-09 SM00184 2/2 221 283 .. 1 23 [] 7.7 2.6 SM00336 2/2 275 316 .. 1 51 [] 51.2 1.3e-10 SM00502 1/1 323 449 .. 1 132 [] 164.5 1e-44 SM00249 2/2 893 936 .. 1 39 [] 52.1 7.4e-11 SM00297 1/1 963 1086 .. 1 118 [] 113.9 1.8e-29 Alignments of top-scoring domains: SM00249: domain 1 of 2, from 128 to 189: score 3.2, E = 18 *->yC.vCgk.........g.llqCdkgCdrwyHv.Clgpple....... +C vC+++ ++++ + +ll C H Cl+ +e++++ + KIAA1113 128 TCaVCQQslqsrreaePkLLPCL-------HSfCLRCLPEperqlsv 167 ..........epdg.wyCprCk<-* + +++++++ + g +Cp C+ KIAA1113 168 pipggsngdiQQVGvIRCPVCR 189 SM00184: domain 1 of 2, from 129 to 188: score 43.2, E = 3.4e-08 *->CpICle.........pvvlpCgH.FCr.Ci................. C++C ++ +++++ +p++lpC H+FC +C+++++++ + + ++++++ KIAA1113 129 CAVCQQslqsrreaePKLLPCLHsFCLrCLpeperqlsvpipggsng 175 .........CPlC<-* + ++ + +CP+C KIAA1113 176 diqqvgvirCPVC 188 SM00336: domain 1 of 2, from 216 to 263: score 48.2, E = 1.1e-09 *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr +++++C++++d++ a+ fC +e+g++lC++C ea Hq++k++++H KIAA1113 216 KSEQVCTSCEDNASAVGFC-VECGEWLCKTCIEA--HQRVKFTKDHL 259 vvll<-* ++ KIAA1113 260 IRKK 263 SM00184: domain 2 of 2, from 221 to 283: score 7.7, E = 2.6 *->CpICle.....pvvlpCgH.FCr.Ci..................... C+ C ++ + ++ +Cg C++Ci+ +++ + ++++ +++++ + KIAA1113 221 CTSCEDnasavGFCVECGEwLCKtCIeahqrvkftkdhlirkkedvs 267 ............CPlC<-* ++ + +++++ CP+ KIAA1113 268 esvgasgqrpvfCPVH 283 SM00336: domain 2 of 2, from 275 to 316: score 51.2, E = 1.3e-10 *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr +r++ C++H+ e +++fC e+++ l CrdC + eH + Hr KIAA1113 275 QRPVFCPVHK-QEQLKLFC-ETCDRLTCRDCQLL-EH------KEHR 312 vvll<-* +++l KIAA1113 313 YQFL 316 SM00502: domain 1 of 1, from 323 to 449: score 164.5, E = 1e-44 *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea q+ a+e ll+kl +k+++ ++a+ q++++i+ev+ e+ ++ve+ KIAA1113 323 QKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVN-----ETNKRVEQ 364 eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle eik+a+++L+n++n+++k Ll++Le+v++++++kL qQ+ ++t+++++++ KIAA1113 365 EIKVAIFTLINEINKKGKSLLQQLENVTKERQMKLLQQQNDITGLSRQVK 414 hainfaeeaLnsgdptelLlskkliierlqellkq<-* h++nf+++a+ sg++t+lL+sk+li+++l++ lk+ KIAA1113 415 HVMNFTNWAIASGSSTALLYSKRLITFQLRHILKA 449 SM00249: domain 2 of 2, from 893 to 936: score 52.1, E = 7.4e-11 *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<- +C vC+ +g+ll+C+ +C++ +H++C+ p+l++ p+g+w+C C+ KIAA1113 893 WCaVCQNgGdLLCCE-KCPKVFHLtCHVPTLLsFPSGdWICTFCR 936 * KIAA1113 - - SM00297: domain 1 of 1, from 963 to 1086: score 113.9, E = 1.8e-29 *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv sp +q+k+++ll l++++ s F+epv+++ + KIAA1113 963 SPVdQRKCERLLLYLYCHELSI------------EFQEPVPAS---I 994 PDYydiIkkPMDLktIkkklengkY...ssleeFvaDfnLmfsNAktYNe P+Yy+iIkkPMDL+t+kkkl++ + ++ + +++FvaD++L+f+N+ +Ne KIAA1113 995 PNYYKIIKKPMDLSTVKKKLQKKHSqhyQIPDDFVADVRLIFKNCERFNE 1044 .................pdsevykdAkkLeklfeeklkelpp<-* + + ++++ + + dsev +++k +fe+kl+e++ KIAA1113 1045 mmkvvqvyadtqeinlkADSEVAQAGKAVALYFEDKLTEIYS 1086 //