HUGE

Gene/Protein Characteristic Table for KIAA1120

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04416
Accession No. :	AB032946
Description :	Voltage-dependent T-type calcium channel subunit alpha-1I.
HUGO Gene Name :
Clone Name :	hg02941 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6405 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3329 bp

Genome contig ID gi89161203f_38290042
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
AGTGTTGTTTTGAATAAAAGCCCAGAAGCCTATTT
Flanking genome sequence
(125641 - 125690)
----+----*----+----*----+----*----+----*----+----*
AAGAATTTCTCCGTGTGTCTCTGCTGTTCTTTCCCCAGCGGGGTGGGTGT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 22 f 38390041 38415681 18 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 1024 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAQ09518	100.0	calcium channel...	Homo sapiens
AAM67414	100.0	voltage-depende...	Homo sapiens
Q9P0X4	100.0	Voltage-depende...	Homo sapiens
EAW60347	99.9	calcium channel...	Homo sapiens
EAW60349	99.9	calcium channel...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB032949	4.4e-85	54.8	KIAA1123
AB037777	4.4e-11	31.7	KIAA1356

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

FPrintScan IPR002077 94 109 PR00167 Ca2+ channel

IPR002077 460 486 PR00167 Ca2+ channel

HMMPfam IPR005821 7 231 PF00520 Ion transport

IPR005821 322 530 PF00520 Ion transport

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR002077	94	109	PR00167	Ca2+ channel
IPR002077	460	486	PR00167	Ca2+ channel
HMMPfam	IPR005821	7	231	PF00520	Ion transport
IPR005821	322	530	PF00520	Ion transport

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 9 NYIFTAIFVGEMTLKVVSLGLYF 31 SECONDARY 23

2 48 LVFVSIIDIVVSLASAGGAKILG 70 PRIMARY 23

3 107 IGNIVLICCAFFIIFGILGVQLF 129 PRIMARY 23

4 168 GQALMSLFVLASKDGWVNIMYNG 190 SECONDARY 23

5 210 LYFISFLLIVSFFVLNMFVGVVV 232 PRIMARY 23

6 288 HYLDIFITFIICLNVVTMSLEH 309 PRIMARY 22

7 323 CNYMFTTVFVLEAVLKLVAFGL 344 SECONDARY 22

8 351 RWNQLDLAIVLLSVMGITLEEIE 373 PRIMARY 23

9 377 ALPINPTIIRIMRVLRIARVLKL 399 SECONDARY 23

10 423 LGLLFMLLFFIYAALGVELFGKL 445 PRIMARY 23

11 506 VSPLYFVSFVLTAQFVLINVVVA 528 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	9	NYIFTAIFVGEMTLKVVSLGLYF	31	SECONDARY	23
2	48	LVFVSIIDIVVSLASAGGAKILG	70	PRIMARY	23
3	107	IGNIVLICCAFFIIFGILGVQLF	129	PRIMARY	23
4	168	GQALMSLFVLASKDGWVNIMYNG	190	SECONDARY	23
5	210	LYFISFLLIVSFFVLNMFVGVVV	232	PRIMARY	23
6	288	HYLDIFITFIICLNVVTMSLEH	309	PRIMARY	22
7	323	CNYMFTTVFVLEAVLKLVAFGL	344	SECONDARY	22
8	351	RWNQLDLAIVLLSVMGITLEEIE	373	PRIMARY	23
9	377	ALPINPTIIRIMRVLRIARVLKL	399	SECONDARY	23
10	423	LGLLFMLLFFIYAALGVELFGKL	445	PRIMARY	23
11	506	VSPLYFVSFVLTAQFVLINVVVA	528	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTAGCCCAGATACACATACTC

Primer_r
: AGCGCCATCAGCAACTAGGAG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 22

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: TTAGCCCAGATACACATACTC
Primer_r	: AGCGCCATCAGCAACTAGGAG
PCR product length	: 209 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3329 bp
Genome contig ID	gi89161203f_38290042
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- AGTGTTGTTTTGAATAAAAGCCCAGAAGCCTATTT
Flanking genome sequence (125641 - 125690)	----+--------+--------+--------+--------+----* AAGAATTTCTCCGTGTGTCTCTGCTGTTCTTTCCCCAGCGGGGTGGGTGT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	22	f	38390041	38415681	18	99.4	Perfect prediction

Gene/Protein Characteristic Table for KIAA1120

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information