hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17582379/chunk_1/iprscan-20080501-17582379.nocrc
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Query sequence: KIAA1121
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  49.2    5.4e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1     559   663 ..     1    82 []    49.2  5.4e-10

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 559 to 663: score 49.2, E = 5.4e-10
                   *->vikeGwLlkks...k.swkkryfvLfn.....gvLlyyksk..kpkg
                      + ++G+L   +++  ++wkkr+fvL   ++ +  ++ y++k+ +p++
    KIAA1121   559    MKHSGYLWAIGknvWkRWKKRFFVLVQvsqytFAMCSYREKkaEPQE 605  

                   sipLsgcsvre.p..........cFeivt.drtlllqAeseeereeWvea
                    + L+g++v+ +++ ++ ++++  F  v ++ t +++ ++e++r  Wv+a
    KIAA1121   606 LLQLDGYTVDYtDpqpgleggraFFNAVKeGDTVIFASDDEQDRILWVQA 655  

                   lqsaiaka<-*
                   + +a+ ++   
    KIAA1121   656 MYRATGQS    663  

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