hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan_v890/data/Pfam
Sequence file:            /cdna/full/goal/hj/hj01698/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  hj01698  1040

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SNF2_N     SNF2 family N-terminal domain                345.8   4.8e-100   1
Helicase_C Helicase conserved C-terminal domain          87.0    3.9e-22   1
ResIII     Type III restriction enzyme, res subunit      -1.9    0.00044   1
DEAD       DEAD/DEAH box helicase                       -29.5       0.15   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
ResIII       1/1     506   673 ..     1   238 []    -1.9  0.00044
DEAD         1/1     510   679 ..     1   210 []   -29.5     0.15
SNF2_N       1/1     512   802 ..     1   356 []   345.8 4.8e-100
Helicase_C   1/1     903   981 ..     1    76 []    87.0  3.9e-22

Alignments of top-scoring domains:
ResIII: domain 1 of 1, from 506 to 673: score -1.9, E = 0.00044
                   *->kiklRpyQeeAirrllesiekgelklaeglkdkdkkkrglivmATGs
                       ++l pyQ+  + ++l+ ++k+               +g+++   G 
     hj01698   506    SLSLKPYQKVGL-NWLALVHKH-------------GLNGILADEMGL 538  

                   GKTltaakiliarLlkkqqklkkg.ridkvLFlVprkdLleQaleeFtkf
                   GKT+ a++ + a+L++     +++++  + L++Vp   ++  ++      
     hj01698   539 GKTIQAIA-FLAYLYQ-----EGNnG--PHLIVVPASTIDNWLR------ 574  

                   eskkkkef.knpgvdkklkvltdnqkdsadggkskk..ndikiifttiQk
                         e++++++  k l +++ +++  + +++ +++ +d+ +i+tt+ +
     hj01698   575 ------EVnLWCPTLKVLCYYGSQEERKQIRFNIHSryEDYNVIVTTYNC 618  

                   LskalkeekendeeekskskeivvglrlapesleflldefdviIiDEaHr
                     + ++ +   +  + +                        + I+DE H 
     hj01698   619 AISSSDDRSLFRRLKLN------------------------YAIFDEGHM 644  

                   ssaktkskkrdedaeklavyrkileKWlkyfkpaflLGlTATPer<-*
                   +  + +             y+ ++       +++ +L lT+TP     
     hj01698   645 LKNMGSIR-----------YQHLMT-----INANNRLLLTGTPVQ    673  

DEAD: domain 1 of 1, from 510 to 679: score -29.5, E = 0.15
                RF    xxxxxxxxxxxx       xxxxxxxxxxxxxxxxxxxxxxxxxx x
                   *->tpiQaeaipail.......DvlvqApTGSGKTlafllPilqallk.p
                       p+Q+  ++ +   ++++ + +++ + G GKT  +   +     ++ 
     hj01698   510    KPYQKVGLNWLAlvhkhglNGILADEMGLGKTIQAIAFLAYLYQEgN 556  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   enkdqeskpslkkkdgpqalvlaPTreLaeQiyeelkklgkgiqpdleel
                                  ++  l+++P    + ++++e++ ++          
     hj01698   557 ---------------NGPHLIVVPAST-IDNWLREVNLWCPT-------- 582  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx
                   lglkvallyGGdsikeqleklDYrkkkglk.gkpdIlvgTPgrLldlllk
                     lkv + yG +  ++q++        + + ++++++v+T+   ++    
     hj01698   583 --LKVLCYYGSQEERKQIRFN-----IHSRyEDYNVIVTTYNCAISSS-- 623  

                RF xxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxx
                   grkregaaldlknlkl..lVlDEAhrlldmkGfgedle.ilrrlprpklr
                        ++  ++++lkl+  ++DE h l +m G     +++++     +  
     hj01698   624 --DD-RS--LFRRLKLnyAIFDEGHMLKNM-G-SIRYQhLMTINA-NN-- 663  

                RF xxxxxxxxxxxxxxxxxxx xxxxxx   
                   rlsqdlpnrqtllfSATlp.rnvedl<-*
                             +ll++ T+ + n+ +l   
     hj01698   664 ----------RLLLTGTPVqNNLLEL    679  

SNF2_N: domain 1 of 1, from 512 to 802: score 345.8, E = 4.8e-100
                   *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla
                      YQ+ G+nWL+  +k          gl+gILADEMGLGKT+Q+I++la
     hj01698   512    YQKVGLNWLALVHKH---------GLNGILADEMGLGKTIQAIAFLA 549  

                   ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn
                   yl++ ++ +    gp+L+V+P+St+dnWl+E+  w+p +l++++yyg+++
     hj01698   550 YLYQEGN-N----GPHLIVVPASTIDNWLREVNLWCP-TLKVLCYYGSQE 593  

                   srdqirkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklei
                   +r      +++r  ++  +  +++v++t+Y+ +++     d++ +    +
     hj01698   594 ER------KQIRFNIHSRYE-DYNVIVTTYNCAIS--SSDDRSLFRR--L 632  

                   nwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE
                   + +y i DEG H++KN  S    ++ l++++ annRLlLTGTP QNnL E
     hj01698   633 KLNYAIFDEG-HMLKNMGSIR--YQHLMTIN-ANNRLLLTGTPVQNNLLE 678  

                   lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadkteaL
                   l+sLlnF+mP  F+s        ++++++f+ +++ ++      ++    
     hj01698   679 LMSLLNFVMPHMFSSST------SEIRRMFSSKTKSAD-----EQSI--- 714  

                   rreknveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel
                    +ek      ++i+  + i+kpf+LRR+K++v+k+Lpp  K++++  c +
     hj01698   715 -YEK------ERIAHAKQIIKPFILRRVKEEVLKQLPP--KKDRIELCAM 755  

                   sklQkelYkkflkgeskdvkaindserreggkeknegksrllnlimqLrK
                   s+ Q++lY  +     +  k in+       k+     +   n +mqLrK
     hj01698   756 SEKQEQLYLGLF---NRLKKSINNLV---TEKN-----TEMCNVMMQLRK 794  

                   icNfHPyLf<-*
                     N HP L    
     hj01698   795 MAN-HPLLH    802  

Helicase_C: domain 1 of 1, from 903 to 981: score 87.0, E = 3.9e-22
                   *->llr.pgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG
                      ll++++++++rl+G++  +eR  ++++F+++    ++L++T+++g+G
     hj01698   903    LLKhHQHRYLRLDGKTQISERIHLIDEFNTDMDifVFLLSTKAGGLG 949  

                   iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   i+++ +n+VI+ d++ np ++ Q+ +R++R+G   
     hj01698   950 INLTSANVVILHDIDCNPYNDKQAEDRCHRVG    981  

//