hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan_v890/data/smart.HMMs Sequence file: /cdna/full/goal/hj/hj01698/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: hj01698 1040 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DEXDc DEAD-like helicases superfamily, catalytic d 137.5 1.5e-36 1 HELICc helicase superfamily c-terminal domain 84.8 1e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DEXDc 1/1 505 699 .. 1 219 [] 137.5 1.5e-36 HELICc 1/1 898 981 .. 1 86 [] 84.8 1e-20 Alignments of top-scoring domains: DEXDc: domain 1 of 1, from 505 to 699: score 137.5, E = 1.5e-36 *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel l pyQk +++wl ++++ ++ila+++G+GKT++++ +l++l hj01698 505 QSlSLKPYQKVGLNWLALVhkhgLNGILADEMGLGKTIQAIAFLAYL 551 lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk ++g +++++L++vP + +++w +e++ ++p lk hj01698 552 YQEG--------NNGPHLIVVP-ASTIDNWLREVNLWCPT--------LK 584 vvglygG.sktkekeqlrklksgkt...dilvtTpgrLldll.ngkglsl v+++yg++ ++q+r ++ ++++ +++vtT+ ++++ ++++ ++ hj01698 585 VLCYYGSqEE---RKQIRFNIHSRYedyNVIVTTYNCAISSSdDRSLFRR 631 .nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATpp +l++ i+DE+H+l++mgs ++++l+++ +rlll++Tp hj01698 632 lKLNYAIFDEGHMLKNMGS----IRYQHLMtINA-----NNRLLLTGTP- 671 eienllklflnlpelfpnpvfisvgf.tlepieqf<-* ++n+l ++++ ++ f+++ ++ e++ hj01698 672 -VQNNLLELMS------LLNFVMPHMfSSSTSEIR 699 HELICc: domain 1 of 1, from 898 to 981: score 84.8, E = 1e-20 *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL d+l+ lLk++ +++++rl+G++ +eR ++++F+++ ++L hj01698 898 DILEVLLKHH----QHRYLRLDGKTQISERIHLIDEFNTDMDifVFL 940 vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-* ++T+++++G++++ +++VI d++ +p ++ Q+ +R++R G hj01698 941 LSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVG 981 //