hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-18050452/chunk_1/iprscan-20080501-18050452.nocrc
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Query sequence: KIAA1125
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00628.19.fs PHD-finger                                   41.6    5.9e-13   2
PF00439.15.fs Bromodomain                                  44.1    8.3e-12   1
PF01753.9.fs MYND finger                                  35.7    7.1e-11   1
PF00855.8.fs PWWP domain                                  38.2    8.1e-11   1
PF00439.15.ls Bromodomain                                  46.0    1.2e-10   1
PF00628.19.ls PHD-finger                                   42.4    1.4e-09   1
PF01753.9.ls MYND finger                                  37.6    4.1e-08   1
PF00855.8.ls PWWP domain                                  36.3    9.7e-08   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00628.19.ls   1/1     109   152 ..     1    51 []    42.4  1.4e-09
PF00628.19.fs   1/2     109   152 ..     1    51 []    40.6  1.3e-12
PF00439.15.fs   1/1     173   259 ..     1    92 []    44.1  8.3e-12
PF00439.15.ls   1/1     173   259 ..     1    92 []    46.0  1.2e-10
PF00855.8.fs   1/1     293   336 ..     1    63 [.    38.2  8.1e-11
PF00855.8.ls   1/1     293   357 ..     1    86 []    36.3  9.7e-08
PF01753.9.fs   1/1    1047  1081 ..     1    43 []    35.7  7.1e-11
PF01753.9.ls   1/1    1047  1081 ..     1    43 []    37.6  4.1e-08

Alignments of top-scoring domains:
PF00628.19.ls: domain 1 of 1, from 109 to 152: score 42.4, E = 1.4e-09
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                      yC vC++     +g  l+C+ C+r +H++Cl ++ epe+   W+Cpe
    KIAA1125   109    YCWVCHR-----EGQVLCCELCPRVYHAKCLRLTSEPEGD--WFCPE 148  

                   Ckpk<-*
                   C+     
    KIAA1125   149 CEKI    152  

PF00628.19.fs: domain 1 of 2, from 109 to 152: score 40.6, E = 1.3e-12
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                      yC vC++     +g  l+C+ C+r +H++Cl ++ epe+   W+Cpe
    KIAA1125   109    YCWVCHR-----EGQVLCCELCPRVYHAKCLRLTSEPEGD--WFCPE 148  

                   Ckpk<-*
                   C+     
    KIAA1125   149 CEKI    152  

PF00439.15.fs: domain 1 of 1, from 173 to 259: score 44.1, E = 8.3e-12
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l +ll++ + + +++ p + +f +pV     + PDY e+I +PMDL 
    KIAA1125   173    LSYLLKFAIQK-MKQ-PGTDAFQKPVPLE--QHPDYAEYIFHPMDLC 215  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T +k+ k+  Y    e+F+aD + ++ N+ +YN+ ++   + Ak    
    KIAA1125   216 TLEKNAKKKMY-GCTEAFLADAKWILHNCIIYNGGNHKLTQIAKV    259  

PF00439.15.ls: domain 1 of 1, from 173 to 259: score 46.0, E = 1.2e-10
                   *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk
                      l +ll++ + + +++ p + +f +pV     + PDY e+I +PMDL 
    KIAA1125   173    LSYLLKFAIQK-MKQ-PGTDAFQKPVPLE--QHPDYAEYIFHPMDLC 215  

                   TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-*
                   T +k+ k+  Y    e+F+aD + ++ N+ +YN+ ++   + Ak    
    KIAA1125   216 TLEKNAKKKMY-GCTEAFLADAKWILHNCIIYNGGNHKLTQIAKV    259  

PF00855.8.fs: domain 1 of 1, from 293 to 336: score 38.2, E = 8.1e-11
                   *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr
                      + +p+ LVwAK+kGFp+WPA+ ++ k+                   +
    KIAA1125   293    CSNPHPLVWAKLKGFPFWPAKALRDKDG------------------Q 321  

                   vkVqFFgdhkyrawvs<-*
                   v+ +FFg h+  awv+   
    KIAA1125   322 VDARFFGQHDR-AWVP    336  

PF00855.8.ls: domain 1 of 1, from 293 to 357: score 36.3, E = 9.7e-08
                   *->dfkpGDLVwAKmkGFpwWPArvvsqketptsvrkkLKRntnsrksnr
                      + +p+ LVwAK+kGFp+WPA+ ++ k+                   +
    KIAA1125   293    CSNPHPLVWAKLKGFPFWPAKALRDKDG------------------Q 321  

                   vkVqFFgdhkyrawvskkrlkPlLdsdiekfhkdekrKg<-*
                   v+ +FFg h+  awv+ ++      s ++ f++++  +    
    KIAA1125   322 VDARFFGQHDR-AWVPINNCYLM--SKEIPFSVKKTKSI    357  

PF01753.9.fs: domain 1 of 1, from 1047 to 1081: score 35.7, E = 7.1e-11
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      CanC +ea +      C  C+n+ YC+  CQ+++W+ +H + C   
    KIAA1125  1047    CANCKKEAIF-----YC--CWNTSYCDYPCQQAHWP-EHMKSC    1081 

PF01753.9.ls: domain 1 of 1, from 1047 to 1081: score 37.6, E = 4.1e-08
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      CanC +ea +      C  C+n+ YC+  CQ+++W+ +H + C   
    KIAA1125  1047    CANCKKEAIF-----YC--CWNTSYCDYPCQQAHWP-EHMKSC    1081 

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