HUGE

Gene/Protein Characteristic Table for KIAA1126

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK06877
Accession No. :	AB032952
Description :	solute carrier family 45, member 4.
HUGO Gene Name :	solute carrier family 45, member 4 (SLC45A4)
Clone Name :	hg02277 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 6873 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
YES

Integrity of 3' end

Length of 3'UTR 5015 bp

Genome contig ID gi51511724r_142186456
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TCCTCTGTGGCTGACTCAATAAACTTTTCCCTCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ACATGATGATGTGGGTGTGTCTGTCACTTCCCTGTGGCCTCCTGCCCTCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 r 142286456 142299091 5 99.0 Perfect prediction

Features of the protein sequence	Description

Length: 618 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
AAI57841	100.0	SLC45A4 protein...	Homo sapiens
EAW92223	99.8	hCG1729650, iso...	Homo sapiens
AAH90891	99.8	SLC45A4 protein...	Homo sapiens
Q5BKX6	99.8	Solute carrier ...	Homo sapiens
EAW92224	99.8	hCG1729650, iso...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 3 RQPIGIVLTVLGVVVLDFSADAT 25 SECONDARY 23

2 44 MALNIHAFSAGLGGAIGYVLGGL 66 SECONDARY 23

3 82 QVLFFFAAIIFTVSVALHLFSID 104 PRIMARY 23

4 357 ELMRLCLCHLLTWFSVIAEAVFY 379 PRIMARY 23

5 409 KMGCWGLVIYAATGAICSALLQK 431 SECONDARY 23

6 437 DLSVRVIYVLGTLGFSVGTAVMA 459 PRIMARY 23

7 465 YVAMVTISTMGIVSMSISYCPYA 487 PRIMARY 23

8 513 DCAILSCQVYISQILVASALGGV 535 PRIMARY 23

9 545 IPMVASVGSFLGFLTATFLVIYP 567 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	3	RQPIGIVLTVLGVVVLDFSADAT	25	SECONDARY	23
2	44	MALNIHAFSAGLGGAIGYVLGGL	66	SECONDARY	23
3	82	QVLFFFAAIIFTVSVALHLFSID	104	PRIMARY	23
4	357	ELMRLCLCHLLTWFSVIAEAVFY	379	PRIMARY	23
5	409	KMGCWGLVIYAATGAICSALLQK	431	SECONDARY	23
6	437	DLSVRVIYVLGTLGFSVGTAVMA	459	PRIMARY	23
7	465	YVAMVTISTMGIVSMSISYCPYA	487	PRIMARY	23
8	513	DCAILSCQVYISQILVASALGGV	535	PRIMARY	23
9	545	IPMVASVGSFLGFLTATFLVIYP	567	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CAGGAGTGTTTCTTGAATGCC

Primer_r
: AGCCATATAAGGGAACAGTTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	YES

Length of 3'UTR	5015 bp
Genome contig ID	gi51511724r_142186456
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TCCTCTGTGGCTGACTCAATAAACTTTTCCCTCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ACATGATGATGTGGGTGTGTCTGTCACTTCCCTGTGGCCTCCTGCCCTCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	r	142286456	142299091	5	99.0	Perfect prediction

Primer_f	: CAGGAGTGTTTCTTGAATGCC
Primer_r	: AGCCATATAAGGGAACAGTTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1126

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information